From fcc6347d7ba6cee74a2bf6ba133538c6999e3432 Mon Sep 17 00:00:00 2001 From: AnjaliRH Date: Mon, 10 Aug 2026 10:32:38 -0400 Subject: [PATCH 1/4] [ARI:0001102, ARI:0001103, ARI:0001104, ARI:0001105, ARI:0001106, ARI:0001107, +9 more] - mappings review --- ontologies/ari_t1d.owl | 51 +++++++++++++++++++++++++++++++++++++++--- 1 file changed, 48 insertions(+), 3 deletions(-) diff --git a/ontologies/ari_t1d.owl b/ontologies/ari_t1d.owl index 54441b2..33f4ec6 100644 --- a/ontologies/ari_t1d.owl +++ b/ontologies/ari_t1d.owl @@ -1625,6 +1625,11 @@ MONDO:0014523 E10 2026-06-12 | System | Initial subtype entry + 1217068008 + 2026-08-04 17:42 | user | Edited: snomed + 37163452 + 2026-08-04 18:04 | user | Edited: omop + 2026-08-04 18:26 | Jennyzeng25 | Cross-reference review: confirmed OMOP 37163452; flagged SNOMED 1217068008; flagged DOID null; flagged MONDO MONDO:0014523; flagged ICD10 E10 @@ -10101,6 +10106,7 @@ The disorder resembles a combination of autoimmune hemolytic anemia, thrombocyto 2026-07-27 18:25 | user | Edited: orphanet 2026-07-27 18:26 | Jennyzeng25 | Cross-reference review: confirmed SNOMED 57160007; confirmed OMOP 81097; confirmed DOID 11042; confirmed MONDO 0007603; confirmed NCI C84712; confirmed ORPHANET 47612; confirmed MESH D005258; flagged ICD10 M05.0; flagged OMIM 134750; flagged UMLS C0015773 2026-07-31 15:41 | Jennyzeng25 | Cross-reference review: confirmed SNOMED 57160007; confirmed OMOP 81097; confirmed DOID 11042; confirmed MONDO 0007603; confirmed NCI C84712; confirmed ORPHANET 47612; confirmed MESH D005258; flagged ICD10 M05.0; flagged OMIM 134750; flagged UMLS C0015773 + 2026-08-04 18:26 | Jennyzeng25 | Cross-reference review: confirmed SNOMED 57160007; confirmed OMOP 81097; confirmed DOID 11042; confirmed MONDO 0007603; confirmed NCI C84712; confirmed ORPHANET 47612; confirmed MESH D005258; flagged ICD10 M05.0; flagged OMIM 134750; flagged UMLS C0015773 @@ -10182,6 +10188,7 @@ ASA is not a concern except for people trying to conceive. 2026-07-27 18:31 | user | Edited: omop 2026-07-31 15:37 | user | Edited: doid 2026-07-31 15:41 | Jennyzeng25 | Cross-reference review: confirmed SNOMED 414238007; confirmed OMOP 4188008; flagged DOID null + 2026-08-04 18:26 | Jennyzeng25 | Cross-reference review: confirmed SNOMED 414238007; confirmed OMOP 4188008; flagged DOID null @@ -10228,6 +10235,12 @@ ASA is not a concern except for people trying to conceive. 2022-12 FM 2026-06-15 10:37 | Importer | Imported from ARI core reports + 2026-08-04 16:59 | user | Edited: snomed + 0005546 + 2026-08-04 17:02 | user | Edited: mondo + 41842 + 2026-08-04 18:23 | user | Edited: orphanet + 2026-08-04 18:26 | Jennyzeng25 | Cross-reference review: confirmed SNOMED 203082005; confirmed OMOP 40405599; confirmed DOID 631; confirmed MONDO 0005546; confirmed NCI C87497; confirmed ICD10 M79.7; confirmed MESH D005356; confirmed ORPHANET 41842 @@ -10305,15 +10318,12 @@ ASA is not a concern except for people trying to conceive. Graves' disease false ARI:0001096 - 237499004 353295004 - 90739004 12361 C0018213 E05.0 D006111 C3071 - 4232076, 138387, 4034811 353295004, 90739004, 237499004 Graves' disease is an autoimmune thyroid disorder that affects the thyroid gland. The thyroid is responsible for producing hormones that regulate processes involved with energy storage and consumption (metabolism), including maintenance of weight, breathing, heart rate, and temperature. In Graves' disease, antibodies cause the thyroid to enlarge and to produce hormones, even when the body doesn't need them. Excessive thyroid hormone production disrupts the regulation of metabolism. The heart, skin, muscles, eyes, and other organs can be affected. Patients often experience loss of weight, tiredness, and heat sensitivity. Some patients develop Graves' ophthalmopathy, a subtype of Graves' disease characterized by protruding eyes. The cause of the disease is uncertain, but risk may increase with excessive stress, certain genes, infection, pregnancy, other autoimmune disorders, and smoking. Graves' disease is more common in females than in males. Graves' disease is a chronic condition with no cure, but symptoms are manageable through medication and surgery. Toxic diffuse goiter @@ -10343,6 +10353,15 @@ ASA is not a concern except for people trying to conceive. 2024-09 GD 2026-06-15 10:37 | Importer | Imported from ARI core reports + 2026-08-04 18:14 | user | Edited: snomed + 4232076 + 2026-08-04 18:15 | user | Edited: omop + 2026-08-04 18:16 | user | Edited: doid + 0005364 + 2026-08-04 18:19 | user | Edited: mondo + 275000 + 2026-08-04 18:23 | user | Edited: omim + 2026-08-04 18:26 | Jennyzeng25 | Cross-reference review: confirmed SNOMED 353295004; confirmed OMOP 4232076; confirmed DOID 12361; confirmed MONDO 0005364; confirmed NCI C3071; confirmed ICD10 E05.0; confirmed OMIM 275000; confirmed MESH D006111 @@ -10953,6 +10972,8 @@ ASA is not a concern except for people trying to conceive. 2026-07-24 20:33 | AnjaliRH | Cross-reference review: confirmed SNOMED 722119002; confirmed OMOP 36716199; confirmed MONDO 0013860; confirmed NCI C123060; confirmed ORPHANET 97560; confirmed MESH D015433; flagged OMIM 614692 2026-07-24 20:38 | AnjaliRH | Cross-reference review: confirmed SNOMED 722119002; confirmed OMOP 36716199; confirmed MONDO 0013860; confirmed NCI C123060; confirmed ORPHANET 97560; confirmed MESH D015433; flagged OMIM 614692 2026-07-24 20:45 | AnjaliRH | Cross-reference review: confirmed SNOMED 722119002; confirmed OMOP 36716199; confirmed MONDO 0013860; confirmed NCI C123060; confirmed ORPHANET 97560; confirmed MESH D015433; flagged OMIM 614692 + C0086445 + 2026-08-10 14:32 | user | Edited: umls @@ -11002,6 +11023,7 @@ ASA is not a concern except for people trying to conceive. 2026-07-24 20:37 | user | Edited: mondo 2026-07-24 20:38 | AnjaliRH | Cross-reference review: confirmed MESH D054990; confirmed ORPHANET 2032; confirmed ICD10 J84.112; confirmed NCI C35716; confirmed MONDO 0800504; confirmed DOID 0050156; confirmed OMOP 45763750; confirmed SNOMED 700250006; flagged OMIM 178500 2026-07-24 20:45 | AnjaliRH | Cross-reference review: confirmed MESH D054990; confirmed ORPHANET 2032; confirmed ICD10 J84.112; confirmed NCI C35716; confirmed MONDO 0800504; confirmed DOID 0050156; confirmed OMOP 45763750; confirmed SNOMED 700250006; flagged OMIM 178500 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed UMLS C1800706 @@ -11092,6 +11114,7 @@ ASA is not a concern except for people trying to conceive. 2026-07-24 20:43 | user | Edited: orphanet 2026-07-24 20:45 | user | Edited: mesh 2026-07-24 20:45 | AnjaliRH | Cross-reference review: confirmed SNOMED 236407003; confirmed OMOP 4128061; confirmed DOID 2986; confirmed MONDO 0005342; confirmed NCI C34643; confirmed ORPHANET 34145; confirmed MESH D005922 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed UMLS C0017661 @@ -11165,6 +11188,7 @@ ASA is not a concern except for people trying to conceive. 2026-08-03 18:43 | AnjaliRH | Cross-reference review: confirmed MESH null 2026-08-07 20:38 | AnjaliRH | Cross-reference review: confirmed MESH null 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed MESH null + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed MESH null @@ -11192,6 +11216,7 @@ ASA is not a concern except for people trying to conceive. 2026-08-07 20:28 | user | Edited: mesh 2026-08-07 20:38 | AnjaliRH | Cross-reference review: confirmed OMOP 28660; confirmed DOID 0090110; flagged SNOMED 237618001; flagged ICD10 E31.0 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed OMOP 28660; confirmed DOID 0090110; flagged SNOMED 237618001; flagged ICD10 E31.0 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed OMOP 28660; confirmed DOID 0090110; flagged SNOMED 237618001; flagged ICD10 E31.0 @@ -11269,6 +11294,7 @@ Note that thrombotic thromocytopenic purpura, TTP, is a <i><b>geneti 2026-08-07 20:34 | user | Edited: mesh 2026-08-07 20:38 | AnjaliRH | Cross-reference review: flagged DOID 8924; flagged ICD10 D69.3, 287.31 2026-08-07 20:42 | AnjaliRH | Cross-reference review: flagged DOID 8924; flagged ICD10 D69.3, 287.31 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed UMLS C0398650; flagged DOID 8924; flagged ICD10 D69.3, 287.31 @@ -11419,6 +11445,7 @@ This condition is usually temporary (4-6 weeks) with a full recovery for most pa 0019167 2026-08-07 20:42 | user | Edited: mondo 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed SNOMED 191306005; confirmed OMOP 4101602; confirmed DOID 11123; confirmed OMIM null + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed SNOMED 191306005; confirmed OMOP 4101602; confirmed DOID 11123; confirmed OMIM null; confirmed UMLS C0034152 @@ -11546,6 +11573,11 @@ At this time, not all IgG4 diseases are documented, and many are very rare. Howe 2026-08-07 20:35 | user | Edited: mesh 2026-08-07 20:38 | AnjaliRH | Cross-reference review: flagged DOID 0080356 2026-08-07 20:42 | AnjaliRH | Cross-reference review: flagged DOID 0080356 + D89.84 + 2026-08-10 14:14 | user | Edited: icd10 + C4087124 + 2026-08-10 14:31 | user | Edited: umls + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: flagged DOID 0080356 @@ -11570,6 +11602,9 @@ At this time, not all IgG4 diseases are documented, and many are very rare. Howe 449563 2026-08-07 20:40 | user | Edited: orphanet 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed SNOMED 1187510006; confirmed OMOP 37162346; confirmed MESH null + C5569009 + 2026-08-10 14:31 | user | Edited: umls + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed SNOMED 1187510006; confirmed OMOP 37162346; confirmed MESH null @@ -11630,6 +11665,7 @@ At this time, not all IgG4 diseases are documented, and many are very rare. Howe 0007827 2026-08-07 20:42 | user | Edited: mondo 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed SNOMED 72315009; confirmed OMOP 4216406; confirmed DOID 3429; confirmed MESH D018979 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed SNOMED 72315009; confirmed OMOP 4216406; confirmed DOID 3429; confirmed MESH D018979; confirmed ICD10 G72.41, 359.71; confirmed UMLS C0238190 @@ -11709,6 +11745,7 @@ At this time, not all IgG4 diseases are documented, and many are very rare. Howe 0005265 2026-08-07 20:42 | user | Edited: mondo 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed SNOMED 24526004; confirmed OMOP 4074815; confirmed DOID 0050589; confirmed MESH D015212 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed SNOMED 24526004; confirmed OMOP 4074815; confirmed DOID 0050589; confirmed MESH D015212; confirmed UMLS C0021390 @@ -11732,6 +11769,7 @@ At this time, not all IgG4 diseases are documented, and many are very rare. Howe 0018465 2026-08-07 20:42 | user | Edited: mondo 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed SNOMED 408539000; confirmed OMOP 4252384; confirmed DOID 0040100; confirmed MESH null + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed SNOMED 408539000; confirmed OMOP 4252384; confirmed DOID 0040100; confirmed MESH null; confirmed UMLS C0854359 @@ -11753,6 +11791,11 @@ At this time, not all IgG4 diseases are documented, and many are very rare. Howe 2026-08-03 18:43 | AnjaliRH | Cross-reference review: confirmed SNOMED 237652003; confirmed OMOP 4129525 2026-08-07 20:38 | AnjaliRH | Cross-reference review: confirmed SNOMED 237652003; confirmed OMOP 4129525 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed SNOMED 237652003; confirmed OMOP 4129525 + E88.818 + 2026-08-10 14:10 | user | Edited: icd10 + C0342337 + 2026-08-10 14:30 | user | Edited: umls + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed SNOMED 237652003; confirmed OMOP 4129525 @@ -11812,6 +11855,7 @@ There are other forms of <a href="/Disease_Profile/uveitis.aspx">uveitis&l 0006806 2026-08-07 20:42 | user | Edited: mondo 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed DOID 12732; confirmed NCI C35110; confirmed MESH D015867 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed DOID 12732; confirmed NCI C35110; confirmed MESH D015867; confirmed UMLS C0042166 @@ -11888,6 +11932,7 @@ There are other forms of <a href="/Disease_Profile/uveitis.aspx">uveitis&l 0015925 2026-08-07 20:41 | user | Edited: mondo 2026-08-07 20:42 | AnjaliRH | Cross-reference review: confirmed SNOMED 233703007; confirmed OMOP 4119786; confirmed DOID 3082; confirmed NCI C164315; confirmed MESH D017563 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed SNOMED 233703007; confirmed OMOP 4119786; confirmed DOID 3082; confirmed NCI C164315; confirmed MESH D017563; confirmed ICD10 J84.9; confirmed UMLS C0206062 From bc026e3fb10557d8d4733aaca65b3b0be4ff81a8 Mon Sep 17 00:00:00 2001 From: AnjaliRH Date: Mon, 10 Aug 2026 10:32:40 -0400 Subject: [PATCH 2/4] Cross-reference mappings (mappings review) --- mappings/ari.sssom.tsv | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/mappings/ari.sssom.tsv b/mappings/ari.sssom.tsv index c983614..04c3a1c 100644 --- a/mappings/ari.sssom.tsv +++ b/mappings/ari.sssom.tsv @@ -400,6 +400,25 @@ ARI:0001071 Complex regional pain syndrome skos:exactMatch Not omop:4256912 sema ARI:0001072 COPA syndrome skos:exactMatch DOID:0081242 semapv:ManualMappingCuration github:KrishnaTO 2026-08-03 ARI:0001072 COPA syndrome skos:exactMatch Not OMIM:616414 semapv:ManualMappingCuration github:KrishnaTO 2026-08-03 ARI:0001212 CREST Syndrome skos:exactMatch Not SNOMEDCT:62382002 semapv:ManualMappingCuration github:KrishnaTO 2026-08-03 +ARI:0001095 Fibromyalgia skos:exactMatch SNOMEDCT:203082005 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001095 Fibromyalgia skos:exactMatch omop:40405599 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001095 Fibromyalgia skos:exactMatch DOID:631 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001095 Fibromyalgia skos:exactMatch MONDO:0005546 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001095 Fibromyalgia skos:exactMatch ncit:C87497 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001095 Fibromyalgia skos:exactMatch icd10cm:M79.7 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001095 Fibromyalgia skos:exactMatch mesh:D005356 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0003 Fulminant type 1 diabetes skos:exactMatch omop:37163452 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001096 Graves' disease skos:exactMatch DOID:12361 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001096 Graves' disease skos:exactMatch MONDO:0005364 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001096 Graves' disease skos:exactMatch ncit:C3071 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001096 Graves' disease skos:exactMatch icd10cm:E05.0 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001096 Graves' disease skos:exactMatch OMIM:275000 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001095 Fibromyalgia skos:exactMatch ORPHA:41842 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0001096 Graves' disease skos:exactMatch mesh:D006111 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0003 Fulminant type 1 diabetes skos:exactMatch Not SNOMEDCT:1217068008 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0003 Fulminant type 1 diabetes skos:exactMatch Not DOID:null semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0003 Fulminant type 1 diabetes skos:exactMatch Not MONDO:MONDO:0014523 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 +ARI:0003 Fulminant type 1 diabetes skos:exactMatch Not icd10cm:E10 semapv:ManualMappingCuration github:Jennyzeng25 2026-08-04 ARI:0001106 Immune Dysregulation, Polyendocrinopathy, Enteropathy, X-Linked Syndrome skos:exactMatch omop:28660 semapv:ManualMappingCuration github:AnjaliRH 2026-08-07 ARI:0001106 Immune Dysregulation, Polyendocrinopathy, Enteropathy, X-Linked Syndrome skos:exactMatch DOID:0090110 semapv:ManualMappingCuration github:AnjaliRH 2026-08-07 ARI:0001105 Immune checkpoint inhibitor-induced autoimmunity skos:exactMatch mesh:null semapv:ManualMappingCuration github:AnjaliRH 2026-08-07 @@ -438,3 +457,15 @@ ARI:0001107 Immune thrombocytopenia skos:exactMatch Not DOID:8924 semapv:ManualM ARI:0001109 Immunoglobulin G4 related disease skos:exactMatch Not DOID:0080356 semapv:ManualMappingCuration github:AnjaliRH 2026-08-07 ARI:0001107 Immune thrombocytopenia skos:exactMatch Not icd10cm:D69.3 semapv:ManualMappingCuration github:AnjaliRH 2026-08-07 ARI:0001107 Immune thrombocytopenia skos:exactMatch Not icd10cm:287.31 semapv:ManualMappingCuration github:AnjaliRH 2026-08-07 +ARI:0001116 Interstitial lung disease skos:exactMatch icd10cm:J84.9 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001111 Inclusion body myositis skos:exactMatch icd10cm:G72.41 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001111 Inclusion body myositis skos:exactMatch icd10cm:359.71 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001103 Idiopathic pulmonary fibrosis skos:exactMatch umls:C1800706 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001107 Immune thrombocytopenia skos:exactMatch umls:C0398650 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001104 IgA nephropathy skos:exactMatch umls:C0017661 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001108 Immunoglobulin A vasculitis skos:exactMatch umls:C0034152 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001111 Inclusion body myositis skos:exactMatch umls:C0238190 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001112 Inflammatory Bowel Disease skos:exactMatch umls:C0021390 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001113 Insulin autoimmune syndrome skos:exactMatch umls:C0854359 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001115 Intermediate uveitis skos:exactMatch umls:C0042166 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001116 Interstitial lung disease skos:exactMatch umls:C0206062 semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 From 2b528bc27156c4f10841a1a7297ba21ec6572602 Mon Sep 17 00:00:00 2001 From: AnjaliRH Date: Mon, 10 Aug 2026 10:32:41 -0400 Subject: [PATCH 3/4] Cross-reference mappings (mappings review) --- mappings/ari.equivalencies.tsv | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/mappings/ari.equivalencies.tsv b/mappings/ari.equivalencies.tsv index e6c151e..d618708 100644 --- a/mappings/ari.equivalencies.tsv +++ b/mappings/ari.equivalencies.tsv @@ -381,6 +381,25 @@ ARI 0001071 Complex regional pain syndrome skos:exactMatch omop 4256912 manual-n ARI 0001072 COPA syndrome skos:exactMatch DOID 0081242 manual github:KrishnaTO ARI 0001072 COPA syndrome skos:exactMatch OMIM 616414 manual-negative github:KrishnaTO ARI 0001212 CREST Syndrome skos:exactMatch SNOMEDCT 62382002 manual-negative github:KrishnaTO +ARI 0001095 Fibromyalgia skos:exactMatch SNOMEDCT 203082005 manual github:Jennyzeng25 +ARI 0001095 Fibromyalgia skos:exactMatch omop 40405599 manual github:Jennyzeng25 +ARI 0001095 Fibromyalgia skos:exactMatch DOID 631 manual github:Jennyzeng25 +ARI 0001095 Fibromyalgia skos:exactMatch MONDO 0005546 manual github:Jennyzeng25 +ARI 0001095 Fibromyalgia skos:exactMatch ncit C87497 manual github:Jennyzeng25 +ARI 0001095 Fibromyalgia skos:exactMatch icd10cm M79.7 manual github:Jennyzeng25 +ARI 0001095 Fibromyalgia skos:exactMatch mesh D005356 manual github:Jennyzeng25 +ARI 0003 Fulminant type 1 diabetes skos:exactMatch omop 37163452 manual github:Jennyzeng25 +ARI 0001096 Graves' disease skos:exactMatch DOID 12361 manual github:Jennyzeng25 +ARI 0001096 Graves' disease skos:exactMatch MONDO 0005364 manual github:Jennyzeng25 +ARI 0001096 Graves' disease skos:exactMatch ncit C3071 manual github:Jennyzeng25 +ARI 0001096 Graves' disease skos:exactMatch icd10cm E05.0 manual github:Jennyzeng25 +ARI 0001096 Graves' disease skos:exactMatch OMIM 275000 manual github:Jennyzeng25 +ARI 0001095 Fibromyalgia skos:exactMatch ORPHA 41842 manual github:Jennyzeng25 +ARI 0001096 Graves' disease skos:exactMatch mesh D006111 manual github:Jennyzeng25 +ARI 0003 Fulminant type 1 diabetes skos:exactMatch SNOMEDCT 1217068008 manual-negative github:Jennyzeng25 +ARI 0003 Fulminant type 1 diabetes skos:exactMatch DOID null manual-negative github:Jennyzeng25 +ARI 0003 Fulminant type 1 diabetes skos:exactMatch MONDO MONDO:0014523 manual-negative github:Jennyzeng25 +ARI 0003 Fulminant type 1 diabetes skos:exactMatch icd10cm E10 manual-negative github:Jennyzeng25 ARI 0001106 Immune Dysregulation, Polyendocrinopathy, Enteropathy, X-Linked Syndrome skos:exactMatch omop 28660 manual github:AnjaliRH ARI 0001106 Immune Dysregulation, Polyendocrinopathy, Enteropathy, X-Linked Syndrome skos:exactMatch DOID 0090110 manual github:AnjaliRH ARI 0001105 Immune checkpoint inhibitor-induced autoimmunity skos:exactMatch mesh null manual github:AnjaliRH @@ -419,3 +438,15 @@ ARI 0001107 Immune thrombocytopenia skos:exactMatch DOID 8924 manual-negative gi ARI 0001109 Immunoglobulin G4 related disease skos:exactMatch DOID 0080356 manual-negative github:AnjaliRH ARI 0001107 Immune thrombocytopenia skos:exactMatch icd10cm D69.3 manual-negative github:AnjaliRH ARI 0001107 Immune thrombocytopenia skos:exactMatch icd10cm 287.31 manual-negative github:AnjaliRH +ARI 0001116 Interstitial lung disease skos:exactMatch icd10cm J84.9 manual github:AnjaliRH +ARI 0001111 Inclusion body myositis skos:exactMatch icd10cm G72.41 manual github:AnjaliRH +ARI 0001111 Inclusion body myositis skos:exactMatch icd10cm 359.71 manual github:AnjaliRH +ARI 0001103 Idiopathic pulmonary fibrosis skos:exactMatch umls C1800706 manual github:AnjaliRH +ARI 0001107 Immune thrombocytopenia skos:exactMatch umls C0398650 manual github:AnjaliRH +ARI 0001104 IgA nephropathy skos:exactMatch umls C0017661 manual github:AnjaliRH +ARI 0001108 Immunoglobulin A vasculitis skos:exactMatch umls C0034152 manual github:AnjaliRH +ARI 0001111 Inclusion body myositis skos:exactMatch umls C0238190 manual github:AnjaliRH +ARI 0001112 Inflammatory Bowel Disease skos:exactMatch umls C0021390 manual github:AnjaliRH +ARI 0001113 Insulin autoimmune syndrome skos:exactMatch umls C0854359 manual github:AnjaliRH +ARI 0001115 Intermediate uveitis skos:exactMatch umls C0042166 manual github:AnjaliRH +ARI 0001116 Interstitial lung disease skos:exactMatch umls C0206062 manual github:AnjaliRH From ef8cf58001944ca52b11bd3e029a238401b48e01 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 16 Aug 2026 12:47:05 -0400 Subject: [PATCH 4/4] Apply review suggestions from PR #52 - Drop ICD-9 mapping icd10cm:359.71 for ARI:0001111 (Inclusion body myositis) from both mapping files. - Retarget ARI:0001107 (Immune thrombocytopenia) UMLS mapping from C0398650 to C0242584 per reviewer preference. - Update the matching ARI_UMLS value in ari_t1d.owl, not just the changelog line, so the ontology and the mapping files agree. Co-Authored-By: Claude Opus 5 --- mappings/ari.equivalencies.tsv | 3 +-- mappings/ari.sssom.tsv | 3 +-- ontologies/ari_t1d.owl | 4 ++-- 3 files changed, 4 insertions(+), 6 deletions(-) diff --git a/mappings/ari.equivalencies.tsv b/mappings/ari.equivalencies.tsv index f810496..ff6a0f1 100644 --- a/mappings/ari.equivalencies.tsv +++ b/mappings/ari.equivalencies.tsv @@ -440,9 +440,8 @@ ARI 0001107 Immune thrombocytopenia skos:exactMatch icd10cm D69.3 manual-negativ ARI 0001107 Immune thrombocytopenia skos:exactMatch icd10cm 287.31 manual-negative github:AnjaliRH ARI 0001116 Interstitial lung disease skos:exactMatch icd10cm J84.9 manual github:AnjaliRH ARI 0001111 Inclusion body myositis skos:exactMatch icd10cm G72.41 manual github:AnjaliRH -ARI 0001111 Inclusion body myositis skos:exactMatch icd10cm 359.71 manual github:AnjaliRH ARI 0001103 Idiopathic pulmonary fibrosis skos:exactMatch umls C1800706 manual github:AnjaliRH -ARI 0001107 Immune thrombocytopenia skos:exactMatch umls C0398650 manual github:AnjaliRH +ARI 0001107 Immune thrombocytopenia skos:exactMatch umls C0242584 manual github:AnjaliRH ARI 0001104 IgA nephropathy skos:exactMatch umls C0017661 manual github:AnjaliRH ARI 0001108 Immunoglobulin A vasculitis skos:exactMatch umls C0034152 manual github:AnjaliRH ARI 0001111 Inclusion body myositis skos:exactMatch umls C0238190 manual github:AnjaliRH diff --git a/mappings/ari.sssom.tsv b/mappings/ari.sssom.tsv index 43dee8f..1c7b1dd 100644 --- a/mappings/ari.sssom.tsv +++ b/mappings/ari.sssom.tsv @@ -460,9 +460,8 @@ ARI:0001107 Immune thrombocytopenia skos:exactMatch Not icd10cm:D69.3 icd10cm se ARI:0001107 Immune thrombocytopenia skos:exactMatch Not icd10cm:287.31 icd10cm semapv:ManualMappingCuration github:AnjaliRH 2026-08-07 ARI:0001116 Interstitial lung disease skos:exactMatch icd10cm:J84.9 icd10cm semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 ARI:0001111 Inclusion body myositis skos:exactMatch icd10cm:G72.41 icd10cm semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 -ARI:0001111 Inclusion body myositis skos:exactMatch icd10cm:359.71 icd10cm semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 ARI:0001103 Idiopathic pulmonary fibrosis skos:exactMatch umls:C1800706 umls semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 -ARI:0001107 Immune thrombocytopenia skos:exactMatch umls:C0398650 umls semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 +ARI:0001107 Immune thrombocytopenia skos:exactMatch umls:C0242584 umls semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 ARI:0001104 IgA nephropathy skos:exactMatch umls:C0017661 umls semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 ARI:0001108 Immunoglobulin A vasculitis skos:exactMatch umls:C0034152 umls semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 ARI:0001111 Inclusion body myositis skos:exactMatch umls:C0238190 umls semapv:ManualMappingCuration github:AnjaliRH 2026-08-10 diff --git a/ontologies/ari_t1d.owl b/ontologies/ari_t1d.owl index f5c06c4..eb666c5 100644 --- a/ontologies/ari_t1d.owl +++ b/ontologies/ari_t1d.owl @@ -11493,7 +11493,7 @@ ASA is not a concern except for people trying to conceive. false ARI:0001107 2897005 - C0398650 + C0242584 D016553 C3446 Immune thrombocytopenia is a pair of autoimmune blood disorders that involves destruction of the normal blood clotting process. "Thrombocytopenia" simply means "low platelet count" and could be caused by many things. One symptom of these conditions is easy or excessive bruising and bleeding, so some names include the term "purpura", which means purple or red discolorations on the skin. The bleeding results from blood pooling under the skin because clotting is impaired. Until scientists identified the autoimmune cause of the disease, it was called "idiopathic thrombocytopenia" because the cause was unknown, and until a cause of an individual's disease is known, that label might be used. @@ -11536,7 +11536,7 @@ Note that thrombotic thrombocytopenic purpura, TTP, is a ***genetic*** disease t 2026-08-07 20:34 | user | Edited: mesh 2026-08-07 20:38 | AnjaliRH | Cross-reference review: flagged DOID 8924; flagged ICD10 D69.3, 287.31 2026-08-07 20:42 | AnjaliRH | Cross-reference review: flagged DOID 8924; flagged ICD10 D69.3, 287.31 - 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed UMLS C0398650; flagged DOID 8924; flagged ICD10 D69.3, 287.31 + 2026-08-10 14:32 | AnjaliRH | Cross-reference review: confirmed UMLS C0242584; flagged DOID 8924; flagged ICD10 D69.3, 287.31 2897005 4103532