diff --git a/docs/tutorials/crypt4gh_to_protes.md b/docs/tutorials/crypt4gh_to_protes.md index 44d8376..9f0ede3 100644 --- a/docs/tutorials/crypt4gh_to_protes.md +++ b/docs/tutorials/crypt4gh_to_protes.md @@ -169,6 +169,8 @@ funnel server run --config server-config.yaml & ```bash cd funnel +# If worker terminates after one task execution, put the command in a while loop. +# while true; do funnel node run --config worker-config.yaml; done funnel node run --config worker-config.yaml & ``` @@ -176,9 +178,11 @@ Verify that both services are running by checking the logs or accessing the Funn ### Step 5: Configure ProTES -ProTES acts as a gateway and provides middleware for automatic Crypt4GH decryption. Follow the [proTES](https://github.com/elixir-cloud-aai/proTES) installation guide to deploy proTES on your third VM. +ProTES acts as a gateway and provides middleware for automatic Crypt4GH decryption. Follow the [proTES](https://github.com/elixir-cloud-aai/proTES) installation guide to deploy proTES on your third VM. -For detailed middleware installation, refer to the [protes-middleware-crypt4gh](https://github.com/elixir-cloud-aai/protes-middleware-crypt4gh). +For detailed middleware installation, refer to the [protes-middleware-crypt4gh](https://github.com/elixir-cloud-aai/protes-middleware-crypt4gh) repository. + +**Note:** If the branch-specific changes are not yet merged, use the `adjust_middleware` branch for `proTES` and the `update_middleware` branch for `protes-middleware-crypt4gh`. Once those changes are merged, use each repository's default branch. Once installed, configure the Crypt4GH middleware by editing the `pro_tes/config.yaml` file: