From 5d2bebcdeee43234e79deb5e1b13890452f3225d Mon Sep 17 00:00:00 2001 From: safisher Date: Thu, 13 Aug 2026 16:23:42 +0100 Subject: [PATCH] Design consistency across tables Made the tables more consistent in look. Cleaned up the CSS code. --- .../doi-template/content-section.html | 2 +- docs/_includes/doi-template/contributors.html | 6 +- docs/_includes/doi-template/definitions.html | 6 +- docs/css/doi-hm-code.css | 42 ---- docs/css/doi-template.css | 124 ++++++----- docs/doi-pages/histology-doi-ex7.md | 204 ++++++++++++++++++ 6 files changed, 279 insertions(+), 105 deletions(-) create mode 100644 docs/doi-pages/histology-doi-ex7.md diff --git a/docs/_includes/doi-template/content-section.html b/docs/_includes/doi-template/content-section.html index 84c31105..ad91acdb 100644 --- a/docs/_includes/doi-template/content-section.html +++ b/docs/_includes/doi-template/content-section.html @@ -1,6 +1,6 @@

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-} - -.schema-wrap .scroll ul { - margin: 0; - padding-left: 18px; -} - .hint { color: #4f5a6d; font-size: 12px; diff --git a/docs/doi-pages/histology-doi-ex7.md b/docs/doi-pages/histology-doi-ex7.md new file mode 100644 index 00000000..b0d46b10 --- /dev/null +++ b/docs/doi-pages/histology-doi-ex7.md @@ -0,0 +1,204 @@ +--- +layout: doi-landing-page +title: Metadata Reporting Standards - Histology +spec_name: Histology +version_label: Version 1 +doi: 10.35079/HBM788.QPBW.699 +published: September 26, 2025 +subjects: "AB-PAS, H&E, H-DAB, LFB, PAS, SBB, Trichrome" +summary: The microscopic study of tissue composition and structure, often referred to as microscopic anatomy. It involves examining tissue samples, typically after they've been sectioned, stained, and placed under a microscope. +schema_doc_href: "https://openview.metadatacenter.org/templates/https:%2F%2Frepo.metadatacenter.org%2Ftemplates%2F907d89c7-6cf4-4ec6-9edd-63cf0441d689" +validator_href: "https://metadatavalidator.metadatacenter.org" +datasets_href: "https://portal.hubmapconsortium.org/search/datasets?dataset_type=Histology" +help_href: /doi-pages-help/ +datasets_text: The HuBMAP Data Portal is an open platform to discover, visualize, and download standardized healthy single-cell and spatial tissue data. +citation_text: Fisher SA, Hardi J, Morgan R, Nordgren E, Kant PM, Honick B, Rosario J, O'Connor MJ, Turner ML, DCWG Members, Gehlenborg N, Blood PD, Silverstein JC, Musen MA. 2026. The HuBMAP Framework for Advancing Data FAIRness. submitted. https://doi.org/10.64898/2026.06.01.728946 +reuse_text: This standard may be reused, expanded, or referenced by external repositories. +contributors_intro: Below is the information for the individuals who contributed to the HuBMAP and SenNet metadata reporting standards. +contributors_note: For questions about this standard, email HuBMAP Helpdesk. You can alternatively reach out to the individuals listed below, either via the email address listed in the table or via contact information provided on their ORCID profile page. + +example_tree: +|- + . + ├── metadata.tsv + ├── extras/ + │ ├── some_file.tsv + │ ├── some_file1.tsv + │ ├── some_file2.tsv + │ ├── some_file3.tsv + │ ├── some_file4.tsv + │ ├── contributors.tsv + │ └── microscope_hardware.json + ├── raw/ + │ └── images/ + │ ├── Brightfield_HE_10msec_image_0001.tiff + │ ├── Brightfield_HE_10msec_image_0002.tiff + │ ├── Brightfield_HE_10msec_image_0003.tiff + │ ├── Brightfield_HE_10msec_image_0004.tiff + │ ├── Brightfield_HE_10msec_image_0005.tiff + │ ├── Brightfield_HE_10msec_image_0006.tiff + │ ├── Brightfield_HE_10msec_image_0007.tiff + │ ├── Brightfield_HE_10msec_image_0008.tiff + │ ├── Brightfield_HE_10msec_image_0009.tiff + │ ├── Brightfield_HE_10msec_image_0010.tiff + │ ├── Brightfield_HE_10msec_image_0010.tiff + │ ├── Brightfield_HE_10msec_image_0011.tiff + │ ├── Brightfield_HE_10msec_image_0012.tiff + │ ├── Brightfield_HE_10msec_image_0013.tiff + │ ├── Brightfield_HE_10msec_image_0014.tiff + │ └── Brightfield_HE_10msec_image_0110.tiff + └── lab_processed/ + └── images/ + ├── Histology_13_95.ome.tiff + ├── Histology_13_95.channels.csv + └── tissue-boundary.geojson + +schema_items: +|- + | Attribute | Type | Description | Allowable Values | + |------|------|-------------|-------------------| + | parent_sample_id *| | Unique HuBMAP or SenNet identifier of the sample (i.e., block, section or suspension) used to perform this assay. For example, for a RNAseq assay, the parent would be the suspension, whereas, for one of the imaging assays, the parent would be the tissue section. If an assay comes from multiple parent samples then this should be a comma separated list. Example: HBM386.ZGKG.235, HBM672.MKPK.442 or SNT232.UBHJ.322, SNT329.ALSK.102 | | + | lab_id | | A locally assigned identifier provided by the data provider for the dataset. It is used to reference an external metadata record that may be maintained independently, enabling traceability and supporting provenance tracking. Example: Visium_9OLC_A4_S1 | | + | preparation_protocol_doi *| | DOI for the protocols.io page that describes the assay or sample procurment and preparation. For example for an imaging assay, the protocol might include staining of a section through the creation of an OME-TIFF file. In this case the protocol would include any image processing steps required to create the OME-TIFF file. Example: https://dx.doi.org/10.17504/protocols.io.eq2lyno9qvx9/v1 | | + | dataset_type *| | The specific type of dataset being produced. | ```10X Multiome``` ```2D Imaging Mass Cytometry``` ```ATACseq``` ```Auto-fluorescence``` ```Cell DIVE``` ```CODEX``` ```Confocal``` ```CosMx``` ```CyCIF``` ```DBiT``` ```DESI``` ```Enhanced Stimulated Raman Spectroscopy (SRS)``` ```GeoMx (nCounter)``` ```GeoMx (NGS)``` ```HiFi-Slide``` ```Histology``` ```LC-MS``` ```Light Sheet``` ```MALDI``` ```MERFISH``` ```MIBI``` ```Molecular Cartography``` ```MUSIC``` ```nanoSPLITS``` ```PhenoCycler``` ```Resolve``` ```RNAseq``` ```RNAseq (with probes)``` ```Second Harmonic Generation (SHG)``` ```SIMS``` ```SNARE-seq2``` ```Stereo-seq``` ```Thick section Multiphoton MxIF``` ```Visium (no probes)``` ```Visium (with probes)``` ```Xenium``` | + | analyte_class *| | Analytes are the target molecules being measured with the assay. | ```Chromatin``` ```DNA``` ```DNA + RNA``` ```Endogenous fluorophores``` ```Fluorochrome``` ```Lipid``` ```Metabolite``` ```Nucleic acid and protein``` ```Peptide``` ```Polysaccharide``` ```Protein``` ```RNA``` | + | is_targeted *| | Specifies whether or not a specific molecule(s) is/are targeted for detection/measurement by the assay ("Yes" or "No"). The CODEX analyte is protein. | | + | acquisition_instrument_vendor *| | An acquisition instrument is the device that contains the signal detection hardware and signal processing software. Assays generate signals such as light of various intensities or color or signals representing the molecular mass. | ```Akoya Biosciences``` ```Andor``` ```BGI Genomics``` ```Bruker``` ```Cytiva``` ```Evident Scientific (Olympus)``` ```GE Healthcare``` ```Hamamatsu``` ```Huron Digital Pathology``` ```Illumina``` ```In-House``` ```Ionpath``` ```Keyence``` ```Leica Biosystems``` ```Leica Microsystems``` ```Motic``` ```NanoString``` ```Resolve Biosciences``` ```Sciex``` ```Standard BioTools (Fluidigm)``` ```Thermo Fisher Scientific``` ```Zeiss Microscopy``` | + | acquisition_instrument_model *| | Manufacturers of an acquisition instrument may offer various versions (models) of that instrument with different features or sensitivities. Differences in features or sensitivities may be relevant to processing or interpretation of the data. | ```Aperio AT2``` ```Aperio CS2``` ```Axio Observer 3``` ```Axio Observer 5``` ```Axio Observer 7``` ```Axio Scan.Z1``` ```BZ-X710``` ```BZ-X800``` ```BZ-X810``` ```CosMx Spatial Molecular Imager``` ```Custom: Multiphoton``` ```Digital Spatial Profiler``` ```DM6 B``` ```DNBSEQ-T7``` ```EVOS M7000``` ```HiSeq 2500``` ```HiSeq 4000``` ```Hyperion Imaging System``` ```IN Cell Analyzer 2200``` ```Lightsheet 7``` ```MALDI timsTOF Flex Prototype``` ```MIBIscope``` ```MoticEasyScan One``` ```NanoZoomer 2.0-HT``` ```NanoZoomer S210``` ```NanoZoomer S360``` ```NanoZoomer S60``` ```NanoZoomer-SQ``` ```NextSeq 2000``` ```NextSeq 500``` ```NextSeq 550``` ```NovaSeq 6000``` ```NovaSeq X``` ```NovaSeq X Plus``` ```Orbitrap Eclipse Tribrid``` ```Orbitrap Fusion Lumos Tribrid``` ```Phenocycler-Fusion 1.0``` ```Phenocycler-Fusion 2.0``` ```PhenoImager Fusion``` ```Q Exactive``` ```Q Exactive HF``` ```Q Exactive UHMR``` ```QTRAP 5500``` ```Resolve Biosciences Molecular Cartography``` ```SCN400``` ```STELLARIS 5``` ```TissueScope LE Slide Scanner``` ```Unknown``` ```VS200 Slide Scanner``` ```Xenium Analyzer``` ```Zyla 4.2 sCMOS``` | + | source_storage_duration_value *| | How long was the source material stored, prior to this sample being processed? For assays applied to tissue sections, this would be how long the tissue section (e.g., slide) was stored, prior to the assay beginning (e.g., imaging). For assays applied to suspensions such as sequencing, this would be how long the suspension was stored before library construction began. | | + | source_storage_duration_unit *| | The time duration unit of measurement | ```hour``` ```month``` ```day``` ```minute``` ```year``` | + | time_since_acquisition_instrument_calibration_value | | The amount of time since the acqusition instrument was last serviced by the vendor. This provides a metric for assessing drift in data capture. | | + | time_since_acquisition_instrument_calibration_unit | | The time unit of measurement | ```Column-by-column``` ```Not applicable``` ```Row-by-row``` ```Snake-by-columns``` ```Snake-by-rows``` | + | contributors_path *| | The path to the file with the ORCID IDs for all contributors of this dataset (e.g., "./extras/contributors.tsv" or "./contributors.tsv"). This is an internal metadata field that is just used for ingest. | | + | data_path *| | The top level directory containing the raw and/or processed data. For a single dataset upload this might be "." where as for a data upload containing multiple datasets, this would be the directory name for the respective dataset. For instance, if the data is within a directory called "TEST001-RK" use syntax "./TEST001-RK" for this field. If there are multiple directory levels, use the format "./TEST001-RK/Run1/Pass2" in which "Pass2" is the subdirectory where the single dataset's data is stored. This is an internal metadata field that is just used for ingest. | | + | is_image_preprocessing_required | | Indicates whether image preprocessing is necessary based on the type of acquisition instrument used, such as a microscope or slide scanner. This may involve steps like fusing image tiles to assemble the complete image. Example: Yes | | + | stain_name *| | The name of the chemical stains (dyes) applied to histology samples to highlight important features of the tissue as well as to enhance the tissue contrast. | ```AB-PAS``` ```H&E``` ```H-DAB``` ```LFB``` ```PAS``` ```Trichrome``` | + | stain_technique | | There are typically three types of stains: progressive, modified progressive, and regressive. Progressive staining occurs when the hematoxylin is added to the tissue without being followed by a differentiator to remove excess dye. With regressive and modified progressive staining, a differentiator is used. | ```Modified progressive staining``` ```Not applicable``` ```Progressive staining``` ```Regressive staining``` | + | is_batch_staining_done *| | Are the slides stained using a linear batch method or individually? | | + | is_staining_automated *| | Is the slide staining automated with an instrument? | | + | preparation_instrument_vendor | | The manufacturer of the instrument used to prepare (staining/processing) the sample for the assay. If an automatic slide staining method was indicated this field should list the manufacturer of the instrument. | ```10x Genomics``` ```Hamamatsu``` ```HTX Technologies``` ```In-House``` ```Leica Biosystems``` ```Not applicable``` ```Roche Diagnostics``` ```SunChrom``` ```Thermo Fisher Scientific``` | + | preparation_instrument_model | | Manufacturers of a staining system instrument may offer various versions (models) of that instrument with different features. Differences in features or sensitivities may be relevant to processing or interpretation of the data. | ```AutoStainer XL``` ```Chromium Connect``` ```Chromium Controller``` ```Chromium iX``` ```Chromium X``` ```Discovery Ultra``` ```EVOS M7000``` ```M3+ Sprayer``` ```M5 Sprayer``` ```NanoZoomer S210``` ```NanoZoomer S360``` ```NanoZoomer S60``` ```Not applicable``` ```ST5020 Multistainer``` ```Sublimator``` ```SunCollect Sprayer``` ```TM-Sprayer``` ```Visium CytAssist``` | + | slide_id | | A unique ID denoting the slide used. This allows users the ability to determine which tissue sections were processed together on the same slide. It is recommended that data providers prefix the ID with the center name, to prevent values overlapping across centers. | | + | tile_configuration | | The configuration of tiles used for stitching in the assay process. If no tile configuration is applicable, enter "Not applicable". Example: Row-by-row | ```Column-by-column``` ```Not applicable``` ```Snake-by-columns``` ```Row-by-row``` ```Snake-by-rows``` | + | scan_direction | | The direction of imaging, which is necessary for the stitching process. Example: Left-and-down | ```Left-and-down``` ```Right-and-down``` ```Not applicable``` ```Right-and-up``` ```Left-and-up``` | + | tiled_image_columns | | The number of columns used in the stitching process of a tiled image, often referred to as the grid size in the x-dimension. Example: 5 | | + | tiled_image_count | | The total number of raw tiled images captured, which are intended to be stitched together. Example: 75 | | + | intended_tile_overlap_percentage | | The intended percentage of overlap between tiled images. This value serves as the set point, although slight variations may occur during image acquisition due to stage registration. Example: 5 | | + | non_global_files | | A semicolon separated list of non-shared files to be included in the dataset. The path assumes the files are located in the "TOP/non-global/" directory. For example, for the file is TOP/non-global/lab_processed/images/1-tissue-boundary.geojson the value of this field would be "./lab_processed/images/1-tissue-boundary.geojson". After ingest, these files will be copied to the appropriate locations within the respective dataset directory tree. This field is used for internal HuBMAP processing. Examples for GeoMx and PhenoCycler are provided in the File Locations documentation: https://hubmapconsortium.github.io/ingest-validation-tools/histology/current/ | | + | metadata_schema_id *| | The string that serves as the definitive identifier for the metadata schema version and is readily interpretable by computers for data validation and processing. Example: 22bc762a-5020-419d-b170-24253ed9e8d9 | | +deprecated_items: +|- + | Attribute | Type | Description | Allowable Values | + |------|------|-------------|-------------------| + | tiled_image_columns | | The number of columns used in the stitching process of a tiled image, often referred to as the grid size in the x-dimension. Example: 5 | | + | tiled_image_count | | The total number of raw tiled images captured, which are intended to be stitched together. Example: 75 | | +definitions: +|- + | Pattern | Required? | Description | + |--|--|--| + | extras/ | ✓ | Folder for general lab-specific files related to the dataset. | + | extras/microscope_hardware.json | ✓ | [QA/QC] A file generated by the micro-meta app that contains a description of the hardware components of the microscope. Email HuBMAP Consortium Help Desk help@hubmapconsortium.org if help is required in generating this document. | + | extras/microscope_settings.json | | [QA/QC] A file generated by the micro-meta app that contains a description of the settings used to acquire the image data. Email HuBMAP Consortium Help Desk help@hubmapconsortium.org if help is required in generating this document. | + | raw/ | ✓ | Raw data files for the experiment. | + | raw/images/ | ✓ | Raw image files. This subdirectory harmonizes with other assays like Visium that include both raw imaging and sequencing data. This directory should include at least one raw file. | + | raw/images/*.{xml,scn,vsi,ndpi,svs,czi,tiff,qptiff} | ✓ | Raw microscope file for the experiment. | + | lab_processed/ | ✓ | Experiment files that were processed by the lab generating the data. | + | lab_processed/images/ | ✓ | Processed image files. | + | lab_processed/images/*.ome.tiff | ✓ | OME-TIFF files (multichannel, multi-layered) produced by the microscopy experiment. If compressed, must use loss-less compression. Required fields - https://docs.google.com/spreadsheets/d/1YnmdTAA0Z9MKN3OjR3Sca8pz-LNQll91wdQoRPSP6Q4/edit#gid=0 | + | lab_processed/images/*ome-tiff.channels.csv | ✓ | Documentation for each channel of the OME-TIFF. One row per channel. Required fields - https://docs.google.com/spreadsheets/d/1xEJSb0xn5C5fB3k62pj1CyHNybpt4-YtvUs5SUMS44o/edit#gid=0 | + | lab_processed/images/*.tissue-boundary.geojson | | [QA/QC] GeoJSON file describing manually identified (or otherwise) tissue boundaries. | + | lab_processed/transformations/ | | Directory containing transformation matrices used to align modalities for multimodal overlays (e.g., MALDI, autofluorescence microscopy, MxIF, histology). | + | lab_processed/transformations/*.txt | | Transformation matrices for overlaying images from the same tissue section. | + | lab_processed/probabilities/ | | Directory containing probabilities related to lab-processed data (e.g., Ilastik pixel classification). | + | lab_processed/probabilities/*.tiff | | [QA/QC] A TIFF file containing pixel probabilities. | + +contributors: +|- + | Name | Affiliation | Contact | ORCID | + |------|-------------|---------|--------| + | Stephen A Fisher | University of Pennsylvania, Philadelphia PA, USA | safisher@upenn.edu | 0000-0001-8034-7685 | + | Josef Hardi | Stanford University, Stanford, CA, USA | johardi@stanford.edu | 0000-0002-2533-6681 | + | Richard Morgan | University of Pittsburgh, Pittsburgh, PA, USA | rsm66@pitt.edu | 0009-0003-1800-8545 | + | Mark A Musen | Stanford University, Stanford, CA, USA | musen@stanford.edu | 0000-0003-3325-793X | + | Jonathan C Silverstein | University of Pittsburgh, Pittsburgh, PA, USA | j.c.s@pitt.edu | 0000-0002-9252-6039 | + |Erik Nordgren|University of Pennsylvania, Philadelphia PA, USA||0000-0002-5024-0278 | + |Peter M Kant|University of Pittsburgh, Pittsburgh, PA, USA; Currently - Otsuka Precision Health, Princeton, NJ, USA||0009-0002-6510-5041 | + |Brendan John Honick|Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, PA, USA||0000-0001-6128-9854 | + |Martin J O'Connor|Stanford University, Stanford, CA, USA||0000-0002-2256-2421 | + |Jean G Rosario|University of Pennsylvania, Philadelphia PA, USA||0000-0002-6116-5058 | + |Nils Gehlenborg|Harvard Medical School, Boston, MA, USA||0000-0003-0327-8297 | + |Philip D Blood|Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, PA, USA||0000-0002-9129-1223 | + |Kyung Jin Ahn|Children's Hospital of Philadelphia, Philadelphia, PA, USA||0000-0002-4184-482X | + |Christopher R Anderton|Pacific Northwest National Laboratory, Richland, WA, USA||0000-0002-6170-1033 | + |Shovik Bandyopadhyay|Children's Hospital of Philadelphia, Philadelphia, PA, USA; Brigham and Women's Hospital, Boston, MA, USA||0000-0003-3919-3914 | + |Kenneth C Bedi|University of Pennsylvania, Philadelphia PA, USA||0000-0003-3588-9324 | + |Maigan Brusko|University of Florida, Gainesville, FL, USA||0000-0002-4331-2202 | + |Martha Campbell-Thompson|University of Florida, Gainesville, FL, USA||0000-0001-6878-1235 | + |James Carson|The University of Texas at Austin, Austin, TX, USA||0000-0001-9009-5645 | + |Chase M Carver|Mayo Clinic, Rochester, MN, USA||0000-0003-4002-2418 | + |Jing Chen|University of Florida, Gainesville, FL, USA||0000-0001-8008-8062 | + |Anthony M Corbett|University of Rochester Medical Center, Rochester, NY, USA||0000-0001-9545-0853 | + |Alexandra E Cuaycal|University of Florida, Gainesville, FL, USA||0000-0002-9060-6326 | + |Penny Cuda|Carnegie Mellon University, Pittsburgh, PA, USA||0009-0002-6547-2650 | + |Dinh Diep|University of California, San Diego, CA, USA; Currently - Altos Labs, San Diego, CA, USA||0000-0001-6057-4119 | + |Sergii Domanskyi|The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA||0000-0002-6847-6019 | + |Sean Donahue|Carnegie Mellon University, Pittsburgh, PA, USA||0000-0002-4072-2046 | + |Michael P Duffy|University of Pennsylvania, Philadelphia PA, USA||0000-0001-5325-3683 | + |Michael T Eadon|Indiana University School of Medicine, Indianapolis, IN, USA||0000-0003-3066-2876 | + |Jean Fan|Johns Hopkins University, Baltimore, MD, USA||0000-0002-0212-5451 | + |Melissa A Farrow|Vanderbilt University, Nashville, TN, USA||0000-0002-1602-2082 | + |Kathleen M Fisch|University of California San Diego, La Jolla, CA, USA||0000-0002-0117-7444 | + |William F Flynn|The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA||0000-0001-6533-0340 | + |James M Fulcher|Pacific Northwest National Laboratory, Richland, WA, USA||0000-0001-9033-3623 | + |Soumya Ghose|GE HealthCare, Niskayuna, NY, USA||0000-0002-2730-1482 | + |Fiona Ginty|GE HealthCare, Niskayuna, NY, USA ||0000-0001-6638-683X | + |Joana P Gonçalves|Delft University of Technology, Delft, The Netherlands||0000-0001-6072-9627 | + |Yongqun He|University of Michigan, Ann Arbor, MI, USA||0000-0001-9189-9661 | + |Po Hu|Children's Hospital of Philadelphia, Philadelphia, PA, USA; University of Pennsylvania, Philadelphia, PA, USA||0000-0003-2422-1652 | + |Sanjay Jain|Washington University School of Medicine, St. Louis, MO, USA||0000-0003-2804-127X | + |Thomas V Karathanos|Stanford University, Stanford, CA, USA||0000-0003-1754-3872 | + |Madhurima Kaushal|Washington University School of Medicine||0000-0003-2760-0586 | + |Angela RS Kruse|Vanderbilt University, Nashville, TN, USA; Currently - The Ohio State University, Columbus, OH, USA||0000-0001-8776-2769 | + |Yumi Kwon|Pacific Northwest National Laboratory, Richland, WA, USA||0000-0003-0523-6197 | + |Blue B Lake|University of California San Diego, La Jolla, CA, USA; Currently - Altos Labs, San Diego, CA, USA||0000-0002-8637-9044 | + |Roy Lardenoije|Delft University of Technology, Delft, The Netherlands | + |Shin Lin|Emory University, Atlanta, GA, USA||0000-0003-0118-0413 | + |Yiing Lin|Washington University, St. Louis, MO, USA||0000-0002-0317-7608 | + |Scott A Lindsay|University of California, San Diego, CA, USA||0000-0002-2929-7755 | + |Peiran Lu|Children's Hospital of Philadelphia, Philadelphia, PA, USA; University of Pennsylvania, Philadelphia, PA, USA||0009-0001-5096-3046 | + |Clayton Mathews|University of Florida, Gainesville, FL, USA||0000-0002-8817-6355 | + |Elizabeth McDonough|GE HealthCare, Niskayuna, NY, USA||0000-0001-7524-8260 | + |Ricardo Melo Ferreira|Indiana University School of Medicine, Indianapolis, IN, USA||0000-0003-2063-9744 | + |Emma M Monte|Stanford University, Stanford, CA, USA||0000-0003-2566-1967 | + |Kathleen O'Neill|University of Pennsylvania, Philadelphia PA, USA||0000-0003-1980-6840 | + |Minxing Pang|University of Pennsylvania, Philadelphia PA, USA||0000-0001-5208-5972 | + |Mana Parast|University of California San Diego, La Jolla, CA, USA||0000-0001-5963-2246 | + |Liming Pei|Children's Hospital of Philadelphia, Philadelphia, PA, USA; University of Pennsylvania, Philadelphia, PA, USA||0000-0002-1924-0333 | + |Samuel Peters|University of Minnesota, Minneapolis, MN, USA||0000-0003-1479-8087 | + |Ajay Pillai|National Institute of Health, Bethesda, MD, USA||0000-0002-9789-7189 | + |Gloria Pryhuber|University of Rochester Medical Center, Rochester, NY, USA||0000-0002-9185-3994 | + |Ling Qin|University of Pennsylvania, Philadelphia PA, USA||0000-0002-2582-0078 | + |Presha Rajbhandari|Columbia University, NYC, NY, USA||0000-0003-2184-7238 | + |Matthew M Ruffalo|Carnegie Mellon University, Pittsburgh, PA, USA||0000-0003-2222-6169 | + |Pinaki Sarder|University of Florida, Gainesville, FL, USA||0000-0003-2450-5233 | + |Diane C Saunders|Ann & Robert H. Lurie Children’s Hospital of Chicago, Chicago, IL, USA; Northwestern University, Chicago, IL, USA||0000-0002-8849-6746 | + |Kevin Schneider|Buck Institute, Novato, CA, USA||0009-0001-8046-0167 | + |Lingyan Shi|University of California San Diego, La Jolla, CA, USA||0000-0003-1373-3206 | + |Santhosh Sivajothi|The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA||0000-0002-8854-4517 | + |David Smith|Children's Hospital of Philadelphia, Philadelphia, PA, USA||0000-0001-7858-3785 | + |Jeff M Spraggins|Vanderbilt University, Nashville, TN, USA||0000-0001-9198-5498 | + |Valentina Stanley|University of California, San Diego, CA, USA||0000-0002-2212-7796 | + |Kai Tan|Children's Hospital of Philadelphia, Philadelphia, PA, USA; University of Pennsylvania, Philadelphia, PA, USA||0000-0002-9104-5567 | + |Anusha Thadi|Children's Hospital of Philadelphia, Philadelphia, PA, USA||0000-0002-1271-0398 | + |Hua Tian|Columbia University Medical Center, NYC, NY, USA||0000-0002-3598-0219 | + |Morgan L Turner|Harvard Medical School, Boston, MA, USA||0000-0002-1512-9742 | + |Ioannis S Vlachos|Beth Israel Deaconess Medical Center, Boston, MA, USA; Harvard Cancer Center, Boston, MA, USA; Broad Institute of MIT and Harvard, Boston, MA, USA||0000-0002-8849-808X | + |Seth Winfree|University of Nebraska Medical Center, Omaha, NE, USA; Currently - QCDx Inc, Farmington, CT, USA|| | + |Pei-Hsun Wu|Johns Hopkins University, Baltimore, MD, USA||0000-0002-7371-2960 | + |Kevin J Zemaitis|Pacific Northwest National Laboratory, Richland, WA, USA||0000-0002-3524-9776 | + |Mowei Zhou|Pacific Northwest National Laboratory, Richland, WA, USA; Currently - Zhejiang University, Hangzhou, Zhejiang 310058, China||0000-0003-3575-3224 | + |Chenchen Zhu|Department of Genetics, Stanford University, Stanford, CA, USA||0000-0003-2165-9456 | + +--- + +{% include doi-template/page.html %}