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Entrypoint escaping was breaking passwords with control characters for sed #8

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When passwords are read from env vars, they are handled by the entryp…
jonbartels Jul 2, 2026
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Restore custom downloads
jonbartels Jul 2, 2026
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jonbartels Jul 2, 2026
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104 changes: 48 additions & 56 deletions deploy/entrypoint.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -7,84 +7,97 @@

set -e

APP_DIR=/opt/engine
APP_DIR=/opt/oie

custom_extension_count=`ls -1 "$APP_DIR"/custom-extensions/*.zip 2>/dev/null | wc -l`
if [ $custom_extension_count != 0 ]; then
echo "Found ${custom_extension_count} custom extensions."
for extension in $(ls -1 "$APP_DIR"/custom-extensions/*.zip); do
unzip -o -q $extension -d "$APP_DIR/extensions"
done
fi
# Set (or append) a property in a Java .properties file.
#
# set_property <key> <value> <file>
#
# The value is passed through the environment and read via awk's ENVIRON, so it
# is treated as a literal string. This avoids the sed replacement pitfalls where
# '&', '\' and '/' are special (e.g. a DATABASE_PASSWORD containing '&' would
# otherwise be expanded to the matched text and corrupt the file).
set_property() {
local key=$1
local value=$2
local file=$3
# Escape regex metacharacters in the key so it matches literally.
local ekey
# shellcheck disable=SC2016 # single quotes are intentional; this is a sed program, not shell
ekey=$(printf '%s' "$key" | sed -e 's/[][\.*^$(){}?+|/-]/\\&/g')

VALUE="$value" awk -v pattern="^${ekey}[[:space:]]*=" -v name="$key" '
$0 ~ pattern { print name " = " ENVIRON["VALUE"]; found=1; next }
{ print }
END { if (!found) print name " = " ENVIRON["VALUE"] }
' "$file" > "$file.tmp" && mv "$file.tmp" "$file"
}

MIRTH_PROPERTIES="$APP_DIR/conf/mirth.properties"

# set storepass and keypass to 'changeme' so they aren't overwritten later
KEYSTORE_PASS=changeme
sed -i "s/^keystore\.storepass\s*=\s*.*\$/keystore.storepass = ${KEYSTORE_PASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
sed -i "s/^keystore\.keypass\s*=\s*.*\$/keystore.keypass = ${KEYSTORE_PASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "keystore.storepass" "$KEYSTORE_PASS" "$MIRTH_PROPERTIES"
set_property "keystore.keypass" "$KEYSTORE_PASS" "$MIRTH_PROPERTIES"

# merge the environment variables into /opt/engine/conf/mirth.properties
# merge the environment variables into mirth.properties
# db type
if ! [ -z "${DATABASE+x}" ]; then
sed -i "s/^database\s*=\s*.*\$/database = ${DATABASE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "database" "$DATABASE" "$MIRTH_PROPERTIES"
fi

# db username
if ! [ -z "${DATABASE_USERNAME+x}" ]; then
sed -i "s/^database\.username\s*=\s*.*\$/database.username = ${DATABASE_USERNAME//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "database.username" "$DATABASE_USERNAME" "$MIRTH_PROPERTIES"
fi

# db password
if ! [ -z "${DATABASE_PASSWORD+x}" ]; then
sed -i "s/^database\.password\s*=\s*.*\$/database.password = ${DATABASE_PASSWORD//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "database.password" "$DATABASE_PASSWORD" "$MIRTH_PROPERTIES"
fi

# db url
if ! [ -z "${DATABASE_URL+x}" ]; then
sed -i "s/^database\.url\s*=\s*.*\$/database.url = ${DATABASE_URL//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "database.url" "$DATABASE_URL" "$MIRTH_PROPERTIES"
fi

# database max connections
if ! [ -z "${DATABASE_MAX_CONNECTIONS+x}" ]; then
sed -i "s/^database\.max-connections\s*=\s*.*\$/database.max-connections = ${DATABASE_MAX_CONNECTIONS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "database.max-connections" "$DATABASE_MAX_CONNECTIONS" "$MIRTH_PROPERTIES"
fi

# database max retries
if ! [ -z "${DATABASE_MAX_RETRY+x}" ]; then
sed -i "s/^database\.connection\.maxretry\s*=\s*.*\$/database.connection.maxretry = ${DATABASE_MAX_RETRY//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "database.connection.maxretry" "$DATABASE_MAX_RETRY" "$MIRTH_PROPERTIES"
fi

# database retry wait time
if ! [ -z "${DATABASE_RETRY_WAIT+x}" ]; then
sed -i "s/^database\.connection\.retrywaitinmilliseconds\s*=\s*.*\$/database.connection.retrywaitinmilliseconds = ${DATABASE_RETRY_WAIT//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "database.connection.retrywaitinmilliseconds" "$DATABASE_RETRY_WAIT" "$MIRTH_PROPERTIES"
fi

# keystore storepass
if ! [ -z "${KEYSTORE_STOREPASS+x}" ]; then
sed -i "s/^keystore\.storepass\s*=\s*.*\$/keystore.storepass = ${KEYSTORE_STOREPASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "keystore.storepass" "$KEYSTORE_STOREPASS" "$MIRTH_PROPERTIES"
fi

# keystore keypass
if ! [ -z "${KEYSTORE_KEYPASS+x}" ]; then
sed -i "s/^keystore\.keypass\s*=\s*.*\$/keystore.keypass = ${KEYSTORE_KEYPASS//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "keystore.keypass" "$KEYSTORE_KEYPASS" "$MIRTH_PROPERTIES"
fi

if ! [ -z "${KEYSTORE_TYPE+x}" ]; then
sed -i "s/^keystore\.type\s*=\s*.*\$/keystore.type = ${KEYSTORE_TYPE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
set_property "keystore.type" "$KEYSTORE_TYPE" "$MIRTH_PROPERTIES"
fi

# session store
if ! [ -z "${SESSION_STORE+x}" ]; then
LINE_COUNT=`grep "server.api.sessionstore" "$APP_DIR/conf/mirth.properties" | wc -l`
if [ $LINE_COUNT -lt 1 ]; then
echo -e "\nserver.api.sessionstore = ${SESSION_STORE//\//\\/}" >> "$APP_DIR/conf/mirth.properties"
else
sed -i "s/^server\.api\.sessionstore\s*=\s*.*\$/server.api.sessionstore = ${SESSION_STORE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
fi
set_property "server.api.sessionstore" "$SESSION_STORE" "$MIRTH_PROPERTIES"
fi

#server ID
if ! [ -z "${SERVER_ID+x}" ]; then
echo -e "server.id = ${SERVER_ID//\//\\/}" > "$APP_DIR/appdata/server.id"
printf 'server.id = %s\n' "$SERVER_ID" > "$APP_DIR/appdata/server.id"
fi

# merge extra environment variables starting with _MP_ into mirth.properties
Expand Down Expand Up @@ -118,21 +131,12 @@ while read -r keyvalue; do
# example: database.max-connections
ACTUAL_KEY="${ACTUAL_KEY,,}"

# if key does not exist in mirth.properties append it at bottom
LINE_COUNT=`grep "^${ACTUAL_KEY}" "$APP_DIR/conf/mirth.properties" | wc -l`
if [ $LINE_COUNT -lt 1 ]; then
# echo "key ${ACTUAL_KEY} not found in mirth.properties, appending. Value = ${VALUE}"
echo -e "\n${ACTUAL_KEY} = ${VALUE//\//\\/}" >> "$APP_DIR/conf/mirth.properties"
else # otherwise key exists, overwrite it
# echo "key ${ACTUAL_KEY} exists, overwriting. Value = ${VALUE}"
ESCAPED_KEY="${ACTUAL_KEY//./\\.}"
sed -i "s/^${ESCAPED_KEY}\s*=\s*.*\$/${ACTUAL_KEY} = ${VALUE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
fi
set_property "${ACTUAL_KEY}" "${VALUE}" "$MIRTH_PROPERTIES"
fi
fi
done <<< "`printenv`"
done <<< "$(printenv)"

# merge vmoptions into /opt/engine/oieserver.vmoptions
# merge vmoptions into oieserver.vmoptions
if ! [ -z "${VMOPTIONS+x}" ]; then
PREV_IFS="$IFS"
IFS=","
Expand All @@ -146,12 +150,9 @@ if ! [ -z "${VMOPTIONS+x}" ]; then
fi

# merge the user's secret mirth.properties
# takes a whole mirth.properties file and merges line by line with /opt/engine/conf/mirth.properties
# takes a whole mirth.properties file and merges line by line with mirth.properties
if [ -f /run/secrets/mirth_properties ]; then

# add new line in case /opt/engine/conf/mirth.properties doesn't end with one
echo "" >> "$APP_DIR/conf/mirth.properties"

while read -r keyvalue; do
KEY="${keyvalue%%=*}"
VALUE="${keyvalue#*=}"
Expand All @@ -161,22 +162,13 @@ if [ -f /run/secrets/mirth_properties ]; then
VALUE="$(echo -e "${VALUE}" | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//')"

if ! [ -z "${KEY}" ] && ! [ -z "${VALUE}" ] && ! [[ ${VALUE} =~ ^\ +$ ]]; then
# if key does not exist in mirth.properties append it at bottom
LINE_COUNT=`grep "^${KEY}" "$APP_DIR/conf/mirth.properties" | wc -l`
if [ $LINE_COUNT -lt 1 ]; then
# echo "key ${KEY} not found in mirth.properties, appending. Value = ${VALUE}"
echo -e "${KEY} = ${VALUE//\//\\/}" >> "$APP_DIR/conf/mirth.properties"
else # otherwise key exists, overwrite it
# echo "key ${KEY} exists, overwriting. Value = ${VALUE}"
ESCAPED_KEY="${KEY//./\\.}"
sed -i "s/^${ESCAPED_KEY}\s*=\s*.*\$/${KEY} = ${VALUE//\//\\/}/" "$APP_DIR/conf/mirth.properties"
fi
set_property "${KEY}" "${VALUE}" "$MIRTH_PROPERTIES"
fi
done <<< "`cat /run/secrets/mirth_properties`"
done <<< "$(cat /run/secrets/mirth_properties)"
fi

# merge the user's secret vmoptions
# takes a whole oieserver.vmoptions file and merges line by line with /opt/engine/oieserver.vmoptions
# takes a whole oieserver.vmoptions file and merges line by line with oieserver.vmoptions
if [ -f /run/secrets/oieserver_vmoptions ]; then
(cat /run/secrets/oieserver_vmoptions ; echo "") >> "$APP_DIR/oieserver.vmoptions"
fi
Expand Down