Skip to content
Draft
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
19 changes: 19 additions & 0 deletions programs/salmon/build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -167,6 +167,25 @@ case "${system}" in
# -DUSE_FJMPI=OFF
# )
# ;;
RIKYU)
module purge
module load nvhpc/26.3
cmake_args=(
"${common_cmake_args[@]}"
-DCMAKE_Fortran_COMPILER=mpif90
-DCMAKE_C_COMPILER=mpicc
-DOPENMP_FLAGS=-Mnoopenmp
-DUSE_OPENACC=ON
-DUSE_CUDA=ON
-DUSE_MPI_DEFAULT=ON
-DCMAKE_SYSTEM_PROCESSOR=openacc
-DCMAKE_Fortran_FLAGS="-O3 -Wall -fstrict-aliasing -acc=strict -gpu=cc100,managed,ptxinfo -cudalib=cublas -cuda -Minfo=accel -DUSE_OPENACC -DUSE_CUDA"
-DCMAKE_C_FLAGS="-O3 -Wall -alias=ansi -acc=strict -gpu=cc100,managed,ptxinfo -cudalib=cublas -cuda -Minfo=accel -DUSE_OPENACC -DUSE_CUDA"
-DCMAKE_CUDA_ARCHITECTURES=100
-DCMAKE_CUDA_FLAGS=-arch=sm_100
-DFORTRAN_COMPILER_HAS_MPI_VERSION3=OFF
)
;;
*)
echo "Unknown system: ${system}" >&2
exit 1
Expand Down
4 changes: 4 additions & 0 deletions programs/salmon/list.csv
Original file line number Diff line number Diff line change
Expand Up @@ -4,3 +4,7 @@ RC_GH200,yes,1,1,1,0:10:00
RC_DGXSP,yes,1,1,1,1:00:00
RC_GENOA,yes,1,1,48,2:00:00
RC_FX700,no,1,1,48,0:30:00
RIKYU,yes,1,4,1,0:30:00
RIKYU,yes,2,4,1,0:30:00
RIKYU,yes,3,4,1,0:30:00
RIKYU,yes,4,4,1,0:30:00
44 changes: 43 additions & 1 deletion programs/salmon/run.sh
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@ RESULTS_DIR="${PWD}/results"
WORK_DIR="${PWD}/salmon_run"
INPUT_ARCHIVE_DEFAULT="/vol0003/rccs-sdt/data/a01010/benchmark_data/SALMON.tar.gz"
INPUT_ARCHIVE_CLOUD="/lvs0/dne1/rccs-nghpcadu/CX_input/SALMON/SALMON.tar.gz"
INPUT_ARCHIVE_RIKYU="/data1/rkp00012/CX_input/SALMON/SALMON.tar.gz"
AOCL_ROOT_DEFAULT="/lvs0/rccs-nghpcadu/nakamura/aocl/install"

mkdir -p "${RESULTS_DIR}"
Expand All @@ -29,6 +30,11 @@ case "${system}" in
exec_gs=(-stdin Si-1-1-1.nml ./salmon)
exec_rt=(-stdin Si-1-1-1-tddft.nml ./salmon)
;;
RIKYU)
input_archive="${BK_SALMON_INPUT_ARCHIVE:-${INPUT_ARCHIVE_RIKYU}}"
exec_gs=(./salmon)
exec_rt=(./salmon)
;;
RC_GH200|RC_DGXSP|RC_GENOA)
input_archive="${INPUT_ARCHIVE_CLOUD}"
exec_gs=(./salmon)
Expand All @@ -47,7 +53,7 @@ fi

uses_stdin_input() {
case "$1" in
RC_GH200|RC_DGXSP|RC_GENOA)
RIKYU|RC_GH200|RC_DGXSP|RC_GENOA)
return 0
;;
*)
Expand Down Expand Up @@ -108,6 +114,35 @@ case "${system}" in
fi
export OMP_NUM_THREADS="${nthreads}"
;;
RIKYU)
module purge
module load nvhpc/26.3
export OMP_NUM_THREADS="${nthreads}"
for nml in Si-1-1-1.nml Si-1-1-1-tddft.nml; do
awk -v nproc_ob="${n_ranks}" '
/^&parallel$/ { print; print " nproc_ob = " nproc_ob; print " nproc_k = 1"; print " nproc_rgrid = 1, 1, 1"; in_parallel=1; next }
in_parallel && /^\// { in_parallel=0; print; next }
in_parallel { next }
{ print }
' "$nml" > "$nml.tmp" && mv "$nml.tmp" "$nml"
done
if [[ "${n_ranks}" -gt 1 ]]; then
cat > wrapper.sh <<'WRAPPER'
#!/bin/bash
NCUDA_GPUS=${NCUDA_GPUS:-$(nvidia-smi -L | wc -l)}
if [ "$OMPI_COMM_WORLD_LOCAL_SIZE" -gt "$NCUDA_GPUS" ]; then
if [ "$OMPI_COMM_WORLD_LOCAL_RANK" -eq 0 ]; then
nvidia-cuda-mps-control -d
fi
sleep 10
fi
export CUDA_VISIBLE_DEVICES=$((${OMPI_COMM_WORLD_LOCAL_RANK} % ${NCUDA_GPUS}))
exec "$@"
WRAPPER
chmod +x wrapper.sh
export UCX_IB_GPU_DIRECT_RDMA=no
fi
;;
# RC_FX700)
# FX700 currently fails during GS initialization even with the Fujitsu
# topology guard patch applied. Keep this route disabled until verified.
Expand All @@ -122,6 +157,13 @@ run_salmon() {
local logfile="$1"
shift
case "${system}" in
RIKYU)
if [[ "${n_ranks}" -gt 1 ]]; then
mpirun -n "${n_ranks}" ./wrapper.sh "$@" > "${logfile}" 2>&1
else
mpirun -n "${n_ranks}" "$@" > "${logfile}" 2>&1
fi
;;
RC_GENOA)
mpirun -n "${n_ranks}" --bind-to core --map-by "ppr:${numproc_node}:node:PE=${nthreads}" "$@" > "${logfile}" 2>&1
;;
Expand Down
Loading