Issue 126: IRI-API - #127

Merged

davramov merged 42 commits into

als-computing:mainfrom

davramov:iri_api

May 26, 2026

Commits on May 26, 2026

Initial commit for adding NERSC IRI-API support alongside SFAPI for job submission
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6b1574e
Adding an abstraction for _submit_job() and _wait_for_job() that use the correct mechanism based on IRI/SF-API
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323b295
moving NERSCLoginMethod(Enum) to the job_controller.py module
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1a0cbd8
Removed NERSCLoginMethod(Enum) from nersc.py. Created a temporary test flow for reconstruction to test job submission. In reconstruct(), replaced the SFAPI-specific job submission/polling code with…
davramov
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0dce5c0
Updating pytests
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df621b0
Updating multires() method to use the generic _submit_job() and _wait_for_job() helpers
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0a585bd
successfully ran reconstruction using the IRI-API
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1e984dc
removing token.py and moving the logic to get_globus_token.py
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6b986f2
moving get_globus_token.py to orchestration/globus/ to be used as a module
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c9a376d
Cleaning up nersc.py
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4e36253
cleaning up old commented code
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3a9ab2f
Updating unit tests
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d36af2f
updating login script
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033da55
Rebasing and including segmentation flows as part of iri/sfapi abstraction
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f6b5042
commenting out petiole segmentation prune block for now, while testing
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c1d1b2c
Making reconstruction run as a task
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701ff6e
Making IRIAPI the default login method for now
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bb48f24
adjusting queue name and account
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5960b13
Making the IRI job submission read sbatch settings
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f3315eb
Switching to debug queue/2 nodes for the IRI demo
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7b98595
check globus token expiration before minting a new one. avoids race condition when submitting concurrent jobs
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256c707
Fixing IRIAPI bugs, also commenting out Globus transfers for now
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2ccd188
removing IRIAPI client ID from nersc.py, since it is only used in globus/get_globus_token.py
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99efa7a
Updating logger comments
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e77706c
connecting to AmSC MLflow service
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149f63d
removing old commented code
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792c7f6
updating pytest
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b5b31cf
linting
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4de1c3e
adjusting import in pytest to avoid error on github that did not occur locally
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79fc854
Getting NERSC reservations working with IRI API
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1eb2b9e
Updating pytests
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12c6853
launch jobs with IRI API and a reservation
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bdeedd5
fixing dino extra_flags bug
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fa1f942
fixing globus token race condition when jobs are launch simultaneously
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439840e
Adding frontend/prefect_runner.html
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c5d9338
updating html page with a timer and collapsible logs
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2a0935b
updating config with confab reservation
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7bb7dae
Separated out general MLflow tests (non-specific to beamlines)
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e7bd36b
removing quotes around enum
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69b8936
moving nersc iri/sf-api resource definitions to config (no longer global variables)
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f759202
Updating nersc.py to pull iri/sf-api parameters from the config, rather than a global variable
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5678f72
removing redundant logging setLevel
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1033161