Bump the python-dependencies group with 4 updates

[dependabot]

Updates the requirements on numpy, pytest, coverage and ruff to permit the latest version.
Updates numpy to 2.5.0

Release notes

Sourced from numpy's releases.

v2.5.0 (June 21, 2026)

NumPy 2.5.0 Release Notes

Numpy 2.5.0 is a transitional release. It drops support for Python 3.11, marking the end of distutils, and expires a large number of deprecations made in the 2.0.x release. It also improves free threading and brings sorting into compliance with the array-api standard with the addition of descending sorts. There is also a fair amount of preparation for Python 3.15, which will be supported starting with the first rc.

This release supports Python versions 3.12-3.14.

Highlights

• Distutils has been removed,
• Many expired deprecations, see below,
• Many new deprecations, see below,
• Many static typing improvements.
• Improved support for free threading,
• Support for descending sorts,

See New Features below for other additions.

Deprecations

• numpy.char.chararray is deprecated. Use an ndarray with a string or bytes dtype instead.

  (gh-30605)

• numpy.take now correctly checks if the result can be cast to the provided out=out under the same-kind rule. A DeprecationWarning is given now when this check fails. Previously, take incorrectly checked if out could be cast to the result (the wrong direction). This deprecation also affects compress and possibly other functions. (Future versions of NumPy may tighten the casting check further.)

  (gh-30615)

• The numpy.char.[as]array functions are deprecated. Use an numpy.[as]array with a string or bytes dtype instead.

  (gh-30802)

• Setting the dtype attribute is deprecated because mutating an array is unsafe if an array is shared, especially by multiple threads. As an alternative, you can create a view with a new dtype via array.view(dtype=new_dtype).

  (gh-29244)

... (truncated)

Changelog

Sourced from numpy's changelog.

This is a walkthrough of the NumPy 2.4.0 release on Linux, which will be the first feature release using the numpy/numpy-release <https://github.com/numpy/numpy-release>__ repository.

The commands can be copied into the command line, but be sure to replace 2.4.0 with the correct version. This should be read together with the :ref:general release guide <prepare_release>.

Facility preparation

Before beginning to make a release, use the requirements/*_requirements.txt files to ensure that you have the needed software. Most software can be installed with pip, but some will require apt-get, dnf, or whatever your system uses for software. You will also need a GitHub personal access token (PAT) to push the documentation. There are a few ways to streamline things:

• Git can be set up to use a keyring to store your GitHub personal access token. Search online for the details.

Prior to release

Add/drop Python versions

When adding or dropping Python versions, multiple config and CI files need to be edited in addition to changing the minimum version in pyproject.toml. Make these changes in an ordinary PR against main and backport if necessary. We currently release wheels for new Python versions after the first Python RC once manylinux and cibuildwheel support that new Python version.

Backport pull requests

Changes that have been marked for this release must be backported to the maintenance/2.4.x branch.

Update 2.4.0 milestones

Look at the issues/prs with 2.4.0 milestones and either push them off to a later version, or maybe remove the milestone. You may need to add a milestone.

Check the numpy-release repo

... (truncated)

Commits

• 6910b28 Merge pull request #31706 from charris/prepare-2.5.0-release
• e0acd2b REL: Prepare for the NumPy 2.5.0 release.
• 8d928b7 Merge pull request #31704 from charris/backport-31649
• c2055ba MAINT: update openblas to 0.3.33.112.0 (#31649)
• ce17c81 Merge pull request #31703 from charris/backport-31609
• 3de6203 BUG: fix StringDType distinct-allocator bugs and add tests (#31609)
• c723971 Merge pull request #31700 from charris/backport-31694
• 64513b2 MAINT: Bump pypa/cibuildwheel from 3.4.1 to 4.1.0
• 04707f0 Merge pull request #31698 from charris/try-fix-emscripten
• 5cf0686 MAINT: Try to fix emscripten wheel build.
• Additional commits viewable in compare view

Updates pytest from 9.0.3 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

• #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
• #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
• #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
• #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

• #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

  If this is undesirable, move the fixture definition to a conftest.py file if possible.

  Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

• #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

  See 10819 and 14011.

• #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

  See dynamic-fixture-request-during-teardown for details.

• #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

  These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

  See parametrize-iterators for details and suggestions.

• #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

  See config-inicfg for more details.

• #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits

• cf470ec Prepare release version 9.1.1
• e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
• 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
• 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
• b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
• 9a567e0 [automated] Update plugin list (#14617) (#14618)
• ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
• 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
• 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
• 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
• Additional commits viewable in compare view

Updates coverage from 7.14.1 to 7.14.3

Changelog

Sourced from coverage's changelog.

Version 7.14.3 — 2026-06-22

• Fix: the default ... exclusion rule now also matches function bodies whose closing return-type bracket is on its own line (for example, after a long -> dict[ ... ] annotation that a formatter has split over multiple lines). Closes issue 2185, thanks Mengjia Shang <pull 2196_>.

• Fix: On 3.13t, we incorrectly issued Couldn't import C tracer errors. We can't import the C tracer because in 7.14.2 we stopped shipping compiled wheels for 3.13t. Thanks, Hugo van Kemenade <pull 2203_>_.

.. _issue 2185: coveragepy/coveragepy#2185 .. _pull 2196: coveragepy/coveragepy#2196 .. _pull 2203: coveragepy/coveragepy#2203

.. _changes_7-14-2:

Version 7.14.2 — 2026-06-20

• Fix: some messages were being written to stdout, making coverage json -o - useless for capturing JSON output. Now messages are written to stderr, fixing issue 2197_.

• Fix: CoverageData kept one SQLite connection per thread that recorded coverage, but never closed them when those threads terminated. On long runs with many short-lived threads this leaked one file descriptor per dead thread, eventually failing with OSError: [Errno 24] Too many open files. Connections belonging to terminated threads are now closed and dropped. Fixes issue 2192. Thanks, Matthew Lloyd <pull 2193_>.

• Fix: when using sys.monitoring, we were assuming we could use the COVERAGE_ID tool id. But other tools might also assume they could use that id. Pre-allocated ids don't really make sense, so now we search for a usable one instead. Fixes issue 2187_.

• Following the advice of cibuildwheel <no-13t_>_, we no longer distribute wheels for Python 3.13 free-threaded.

.. _issue 2187: coveragepy/coveragepy#2187 .. _issue 2192: coveragepy/coveragepy#2192 .. _pull 2193: coveragepy/coveragepy#2193 .. _issue 2197: coveragepy/coveragepy#2197 .. _no-13t: https://py-free-threading.github.io/ci/#building-free-threaded-wheels-with-cibuildwheel

.. _changes_7-14-1:

Commits

• 22f13ea docs: sample HTML for 7.14.3
• 2ca4e5f docs: prep for 7.14.3
• 01d714e docs: add changelog entry for #2203
• f36248d fix: don't emit 'Couldn't import C tracer' warning for 3.13t (#2203)
• 86d73d1 docs: thanks, Mengjia Shang
• 3d4ae3c docs: add the #2196 pr link to CHANGES
• f4b2b4d fix: exclude ... bodies after multi-line return-type annotations (#2185) (#...
• 1980ed0 chore: bump sigstore/gh-action-sigstore-python (#2201)
• bca3217 build: since we don't ship 3.13t, don't test it
• 77550d8 docs: oops, mismatched pull requests
• Additional commits viewable in compare view

Updates ruff from 0.15.15 to 0.15.20

Release notes

Sourced from ruff's releases.

0.15.20

Release Notes

Released on 2026-06-25.

Preview features

• Allow human-readable names in rule selectors (#25887)
• Emit a warning instead of an error for unknown rule selectors (#26113)
• Match noqa shebang handling in ruff:ignore comments (#26286)
• [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

• Add versioning sections to custom crate READMEs (#26317)
• Update ruff_python_parser README for crates.io (#26315)
• [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

• @​dhruvmanila
• @​MichaReiser
• @​ntBre
• @​trilamsr

Install ruff 0.15.20

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.ps1 | iex"

Download ruff 0.15.20

File	Platform	Checksum
ruff-aarch64-apple-darwin.tar.gz	Apple Silicon macOS	checksum
ruff-x86_64-apple-darwin.tar.gz	Intel macOS	checksum
ruff-aarch64-pc-windows-msvc.zip	ARM64 Windows	checksum
ruff-i686-pc-windows-msvc.zip	x86 Windows	checksum
ruff-x86_64-pc-windows-msvc.zip	x64 Windows	checksum
ruff-aarch64-unknown-linux-gnu.tar.gz	ARM64 Linux	checksum
ruff-i686-unknown-linux-gnu.tar.gz	x86 Linux	checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.20

Released on 2026-06-25.

Preview features

• Allow human-readable names in rule selectors (#25887)
• Emit a warning instead of an error for unknown rule selectors (#26113)
• Match noqa shebang handling in ruff:ignore comments (#26286)
• [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

• Add versioning sections to custom crate READMEs (#26317)
• Update ruff_python_parser README for crates.io (#26315)
• [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

• @​dhruvmanila
• @​MichaReiser
• @​ntBre
• @​trilamsr

0.15.19

Released on 2026-06-23.

Preview features

• Support human-readable names when hovering suppression comments and in code actions (#26114)

Bug fixes

• Fall back to default settings when editor-only settings are invalid (#26244)
• Fix panic when inserting text at a notebook cell boundary (#26111)

Rule changes

• [pylint] Update fix suggestions for __floor__, __trunc__, __length_hint__, and __matmul__ variants (PLC2801) (#26239)

Performance

• Avoid allocating when parsing single string literals (#26200)
• Avoid reallocating singleton call arguments (#26223)
• Lazily create source files for lint diagnostics (#26226)
• Optimize formatter text width and indentation (#26236)
• Reserve capacity for builtin bindings (#26229)
• Skip repeated-key checks for singleton dictionaries (#26228)
• Use ArrayVec for qualified name segments (#26224)

... (truncated)

Commits

• f82a36b Bump 0.15.20 (#26376)
• af32943 Improve the summarise-ecosystem-results skill (#26378)
• 485ebab Remove RUF076 name from schema (#26371)
• ef81835 [ty] Implement rust-analyzer's "Click for full compiler diagnostic" feature (...
• 572b31e [ruff] Remove pytest-fixture-autouse (RUF076) (#26240)
• f703f21 Allow human-readable names in rule selectors (#25887)
• 0d726b2 [ty] Reuse equality semantics for membership compatibility (#25955)
• dbe6e98 [ty] Infer definite equality comparison results (#26337)
• e700ea3 [ty] Prove TypedDict structural patterns exhaustive (#26285)
• 6a0d2ec [ty] Widen inferred class-valued instance attributes (#26338)
• Additional commits viewable in compare view

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