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docs(tutorials): update crypt4GH to proTES guide #36

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docs(tutorials): update crypt4GH to proTES guide
Apr 24, 2026
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svedziok Jul 6, 2026
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8 changes: 6 additions & 2 deletions docs/tutorials/crypt4gh_to_protes.md
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Expand Up @@ -169,16 +169,20 @@ funnel server run --config server-config.yaml &

```bash
cd funnel
# If worker terminates after one task execution, put the command in a while loop.
# while true; do funnel node run --config worker-config.yaml; done
funnel node run --config worker-config.yaml &
```
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Verify that both services are running by checking the logs or accessing the Funnel server API at `http://<server-ip>:8000`.

### Step 5: Configure ProTES

ProTES acts as a gateway and provides middleware for automatic Crypt4GH decryption. Follow the [proTES](https://github.com/elixir-cloud-aai/proTES) installation guide to deploy proTES on your third VM.
ProTES acts as a gateway and provides middleware for automatic Crypt4GH decryption. Follow the [proTES](https://github.com/elixir-cloud-aai/proTES) installation guide to deploy proTES on your third VM.

For detailed middleware installation, refer to the [protes-middleware-crypt4gh](https://github.com/elixir-cloud-aai/protes-middleware-crypt4gh).
For detailed middleware installation, refer to the [protes-middleware-crypt4gh](https://github.com/elixir-cloud-aai/protes-middleware-crypt4gh) repository.

**Note:** If the branch-specific changes are not yet merged, use the `adjust_middleware` branch for `proTES` and the `update_middleware` branch for `protes-middleware-crypt4gh`. Once those changes are merged, use each repository's default branch.

Once installed, configure the Crypt4GH middleware by editing the `pro_tes/config.yaml` file:

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