update documentations with references - #316
Conversation
| Available at: | ||
| https://www.fao.org/agrovoc/ | ||
|
|
||
| .. [#agrovoc-paper] Subirats-Coll, I., Kolshus, K., Turbati, A., |
There was a problem hiding this comment.
This paper should be added. it is the related paper to the ontology.
| doi:10.1186/gb-2010-11-1-r2 | ||
| Available at: `https://pmc.ncbi.nlm.nih.gov/articles/PMC2847714/ <https://pmc.ncbi.nlm.nih.gov/articles/PMC2847714/>`_ | ||
|
|
||
| .. [#pato-anatomy] Gkoutos, G. V., Schofield, P. N., and Hoehndorf, R. |
There was a problem hiding this comment.
This is relevant, please revert it back!
|
|
||
| **Example Usage**: | ||
| Annotate a dataset of small molecules with CHIRO terms to specify their roles, such as "enzyme inhibitor" or "neurotransmitter," and link these roles to relevant biological processes or pathways. | ||
| The CHEBI Integrated Role Ontology (CHIRO) is a specialized ontology |
There was a problem hiding this comment.
Maybe a citation for chebi ontology would be also great here.
| Available at: | ||
| `https://github.com/rsc-ontology/rsc-cmo <https://github.com/rsc-ontology/rsc-cmo>`_ | ||
|
|
||
| .. [#chmo-bioportal] NCBO BioPortal. n.d. "Chemical Methods Ontology." |
| Available at: | ||
| `https://knowledgebase.nfdi4chem.de/knowledge_base/docs/ontology/ <https://knowledgebase.nfdi4chem.de/knowledge_base/docs/ontology/>`_ | ||
|
|
||
| .. [#chebi-paper] Degtyarenko, K., de Matos, P., Ennis, M., Hastings, J., |
There was a problem hiding this comment.
Why chebi ontology is being cited here?
| "Core CIF dictionary." | ||
| Available at: | ||
| `https://www.iucr.org/resources/cif/dictionaries/cif_core <https://www.iucr.org/resources/cif/dictionaries/cif_core>`_ | ||
|
|
There was a problem hiding this comment.
There was a problem hiding this comment.
correct reference for citation:
FAIRsharing.org: QUDT;Quantities, Units, Dimensions and Types , DOI: 10.25504/FAIRsharing.d3pqw7, Last Edited: Thursday, March 26th 2026, 10:27, Last Editor:Lea.Girard,Last Accessed:Thursday, May 21st 2026, 21:44,Last Reviewed:Tuesday, March 25th 2025, 10:11
There was a problem hiding this comment.
correct citation:
ETSI TC SmartM2M, SmartM2M. "SAREF reference ontology patterns, Technical Specification ETSI TS 103 548 V1. 2.1, ETSI, 2024." URL: https://www. etsi. org/deliver/etsi_ts/103500_ 103599.103548: 01-02.
There was a problem hiding this comment.
citations
-
Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18
-
Tobias Kuhn, Michel Dumontier. FAIR Vocabulary.
Provenance of this page
There was a problem hiding this comment.
list of publications:
https://bfo-ontology.github.io/publications.html
use one that is appropiate (or maybe two)
2 participants
Added references and performed minor cleanup for the ontology documentation pages across Agriculture, Arts and Humanities, Biology and Life Sciences, Chemistry, Ecology and Environment, Education, Events, Finance, Food and Beverage, General Knowledge, Geography, Industry, Law, Library and Cultural Heritage, Materials Science and Engineering, Medicine, News and Media, Scholarly Knowledge, Social Sciences, Units and Measurements, Upper Ontology, and Web and Internet.