Name	Name	Last commit message	Last commit date
Latest commit History 773 Commits
config	config
experimental	experimental
filetracker	filetracker
helper	helper
include	include
remote	remote
tests	tests
.gitignore	.gitignore
.gitmodules	.gitmodules
COPYING	COPYING
README.textile	README.textile
analyze-protein-groups.rb	analyze-protein-groups.rb
analyze-psm.rb	analyze-psm.rb
annotate-csv.rb	annotate-csv.rb
augustus-collect.defunct.rb	augustus-collect.defunct.rb
check-fasta.rb	check-fasta.rb
check-spectra.rb	check-spectra.rb
checkmod.rb	checkmod.rb
chop-fasta.rb	chop-fasta.rb
compare-omssa-simquant.defunct.rb	compare-omssa-simquant.defunct.rb
compare-omssa.rb	compare-omssa.rb
compare-psm-mod.rb	compare-psm-mod.rb
compare-sequest-csv.rb	compare-sequest-csv.rb
compile-gpf-index.rb	compile-gpf-index.rb
convert-peaks-results-to-csv.rb	convert-peaks-results-to-csv.rb
create-archive.php	create-archive.php
create-fasta.rb	create-fasta.rb
crosslink-masscalc.rb	crosslink-masscalc.rb
csv-to-mzidentml.rb	csv-to-mzidentml.rb
decoyfasta.rb	decoyfasta.rb
decoyfasta_py.defunct.py	decoyfasta_py.defunct.py
difference.rb	difference.rb
digest-protein.rb	digest-protein.rb
draw-diagram.defunct.rb	draw-diagram.defunct.rb
duplicate-csv-column.rb	duplicate-csv-column.rb
exclusion.rb	exclusion.rb
export-psm-to-ams.rb	export-psm-to-ams.rb
extract-csv-column.rb	extract-csv-column.rb
extract-gpf-peptides.rb	extract-gpf-peptides.rb
extract-omssa-results.rb	extract-omssa-results.rb
extract-sequest-results.rb	extract-sequest-results.rb
fasta-to-blast.rb	fasta-to-blast.rb
filter-psm-apply-protein-groups.rb	filter-psm-apply-protein-groups.rb
filter-psm-by-fpr.rb	filter-psm-by-fpr.rb
filter-psm-by-mass-accuracy.rb	filter-psm-by-mass-accuracy.rb
filter-psm-by-threshold.rb	filter-psm-by-threshold.rb
filter-psm-crop-by-hit-distinctiveness.rb	filter-psm-crop-by-hit-distinctiveness.rb
filter-psm-group-proteins.rb	filter-psm-group-proteins.rb
filter-psm-sanitize.rb	filter-psm-sanitize.rb
filter-qe-add-protein-groups.rb	filter-qe-add-protein-groups.rb
filter-qe-add-proteins.rb	filter-qe-add-proteins.rb
filter-qe-by-band.rb	filter-qe-by-band.rb
filter-qe-combine-pbc.rb	filter-qe-combine-pbc.rb
filter-qe-compare-ratios.rb	filter-qe-compare-ratios.rb
filter-qe-normalize.rb	filter-qe-normalize.rb
filter-qe-require-both-states.rb	filter-qe-require-both-states.rb
filter-qe-require-ms2.rb	filter-qe-require-ms2.rb
gff-length-histogram.rb	gff-length-histogram.rb
highlight.rb	highlight.rb
indirect-quantitation.defunct.rb	indirect-quantitation.defunct.rb
intersection.rb	intersection.rb
isotope-envelope.rb	isotope-envelope.rb
join-csv.rb	join-csv.rb
localize-by-spectral-counts.rb	localize-by-spectral-counts.rb
masscalc.rb	masscalc.rb
match-peaks.rb	match-peaks.rb
match-peptides.rb	match-peptides.rb
md5sum.rb	md5sum.rb
merge-csv-files.rb	merge-csv-files.rb
merge-fasta.rb	merge-fasta.rb
merge-mgf-files.rb	merge-mgf-files.rb
merge-sequest-csv.rb	merge-sequest-csv.rb
mzml-to-mgf.rb	mzml-to-mgf.rb
patchy-peptides.rb	patchy-peptides.rb
peptide-mass.rb	peptide-mass.rb
prefix-fasta.py	prefix-fasta.py
protein-list-to-groups.rb	protein-list-to-groups.rb
psm-extract-identifications.rb	psm-extract-identifications.rb
psm-score-histogram.rb	psm-score-histogram.rb
qtrace-crop-xhtml-report.rb	qtrace-crop-xhtml-report.rb
qtrace-estimate-labeling-efficiency.defunct.rb	qtrace-estimate-labeling-efficiency.defunct.rb
qtrace.rb	qtrace.rb
raw-to-mzml.rb	raw-to-mzml.rb
run-blast.rb	run-blast.rb
run-gpf.rb	run-gpf.rb
run-omssa.rb	run-omssa.rb
run-peaks.rb	run-peaks.rb
sixframes.rb	sixframes.rb
split-csv-file.rb	split-csv-file.rb
strip-mzml.rb	strip-mzml.rb
subtract-psm-scans-from-xquest.rb	subtract-psm-scans-from-xquest.rb
swap-csv-columns.rb	swap-csv-columns.rb
transpose-dna.defunct.php	transpose-dna.defunct.php
transpose-dna.defunct.py	transpose-dna.defunct.py
transpose-dna.rb	transpose-dna.rb
union.rb	union.rb
unwrap-fasta.py	unwrap-fasta.py
write-blast-report.rb	write-blast-report.rb
write-omssa-report.rb	write-omssa-report.rb
xquest-xml-to-csv.rb	xquest-xml-to-csv.rb

Name

Last commit message

Last commit date

773 Commits