Swap verifybamid to topic#12262
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SPPearce
marked this pull request as ready for review
July 7, 2026 12:57
atrigila
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Jul 7, 2026
| "id": "test", | ||
| "single_end": false | ||
| }, | ||
| "test.depthRG:md5,2374504c4138c04f3b29210dcb3da96f" |
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I am not sure why this one is removed?
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This wasn't being generated because ext.args wasn't defined in the main.nf, meaning the nextflow config which was telling it to not be generated was ignored.
I've just removed the config entirely, the file isn't empty so everything works smoothly.
mashehu
approved these changes
Jul 13, 2026
| tuple val(meta), path("*.depthRG"), emit: depthrg, optional:true | ||
| tuple val(meta), path("*.bestSM") , emit: bestsm , optional:true | ||
| tuple val(meta), path("*.bestRG") , emit: bestrg , optional:true | ||
| tuple val("${task.process}"), val('verifybamid'), eval("echo '1.1.3'"), emit: versions_verifybamid, topic: versions |
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Suggested change
| tuple val("${task.process}"), val('verifybamid'), eval("echo '1.1.3'"), emit: versions_verifybamid, topic: versions | |
| tuple val("${task.process}"), val('verifybamid'), val('1.1.3'), emit: versions_verifybamid, topic: versions |
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Swap verifybamid to topic