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Pull requests: nf-core/modules

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Pull requests list

Add rclone check and checksum modules
#12346 opened Jul 10, 2026 by delfiterradas Contributor Loading…
17 tasks
@delfiterradas
Bump Samtools to v1.24 size/xl
#12340 opened Jul 9, 2026 by matthdsm Contributor Loading…
17 tasks
10
Add rclone copy Ready for Review
#12337 opened Jul 9, 2026 by antoniasaracco Contributor Loading…
12306 adding request db module to the nf coregapseq size/m
#12333 opened Jul 9, 2026 by brovolia Contributor Loading…
1
3
Fix strict syntax in utils_* subworkflows
#12329 opened Jul 9, 2026 by itrujnara Contributor Loading…
2 of 4 tasks
6
Swap strelka to topic channels size/m
#12290 opened Jul 8, 2026 by SPPearce Contributor • Draft
Swap taxpasta to topic channels size/m
#12285 opened Jul 8, 2026 by SPPearce Contributor Loading…
3
Swap svtyper to topics size/m
#12284 opened Jul 8, 2026 by SPPearce Contributor • Draft
Swap poolsnp to topics size/m
#12282 opened Jul 8, 2026 by SPPearce Contributor • Draft
17 tasks
feat (closes #7246): add new component: leafcutter/differentialsplicing
#12271 opened Jul 7, 2026 by JTL-lab Contributor Loading…
14 of 17 tasks
1
Add rclone check and checksum draft
#12269 opened Jul 7, 2026 by atrigila Contributor • Draft
@atrigila @delfiterradas
6
Swap verifybamid to topic size/m
#12262 opened Jul 7, 2026 by SPPearce Contributor Loading…
2
Update to topic motus/*
#12261 opened Jul 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
4
@LouisLeNezet
Update to topic metaspace/*
#12247 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
1
Update to topic metamaps/*
#12246 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
4
new module: fastaguard
#12239 opened Jul 3, 2026 by ehsanestaji Contributor Loading…
14 of 15 tasks
9
Add new subworkflow: ubam_align_minimap2 Ready for Review
#12238 opened Jul 3, 2026 by manascripts Member Loading…
7 of 17 tasks
Update deacon module awaiting-changes will be closed after 30 days draft
#12236 opened Jul 3, 2026 by sofstam Contributor Loading…
17 tasks
Add subworkflow: fastq_align_minimap2 Ready for Review size/m
#12235 opened Jul 3, 2026 by manascripts Member Loading…
8 of 17 tasks
gstama_polyacleanup: Fixed regression - Fixing output glob awaiting-changes will be closed after 30 days
#12228 opened Jul 2, 2026 by sguizard Contributor Loading…
3
Add ciri2 module draft
#12224 opened Jul 1, 2026 by razmia02 • Draft
17 tasks
Added nf-core module presto/pairseq Ready for Review
#12222 opened Jul 1, 2026 by Vivian0105 Contributor Loading…
17 tasks
2
update telescope version to 1.0.4
#12218 opened Jul 1, 2026 by hanalysis Contributor Loading…
10
Seqkit replace - fix #9647 and #9646 awaiting-changes will be closed after 30 days
#12213 opened Jul 1, 2026 by ammaraziz Contributor Loading…
1
1
Update: pangolin modules awaiting-changes will be closed after 30 days
#12211 opened Jul 1, 2026 by ammaraziz Contributor Loading…
6
ProTip! What’s not been updated in a month: updated:<2026-06-10.